Overview
- External ontology
- TOGO:M1025 — Alkalinus Abyssiniese Medium
- Applications
-
- Microbial cultivation
- High-metal flag
- True
- Notes
- Source: https://togomedium.org/medium/M1025 Original source: JCM - JCM_M974 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=974
Composition
flowchart LR
CultureMech_007539["alkalinus_abyssiniese_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_007539 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_007539 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_NaCl["NaCl"]
CultureMech_007539 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_007539 --> ing3_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_2H2O -.-> CHEBI_86158
ing4_KH2PO4["KH2PO4"]
CultureMech_007539 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_007539 --> ing5_Yeast_extract__BD_Difco_
ing6_Peptone__Oxoid_["Peptone (Oxoid)"]
CultureMech_007539 --> ing6_Peptone__Oxoid_
ing7_Na2MoO4_2H2O["Na2MoO4・2H2O"]
CultureMech_007539 --> ing7_Na2MoO4_2H2O
CHEBI_75213["CHEBI:75213"]
ing7_Na2MoO4_2H2O -.-> CHEBI_75213
ing8_H3BO4["H3BO4"]
CultureMech_007539 --> ing8_H3BO4
ing9_MnCl2_4H2O["MnCl2・4H2O"]
CultureMech_007539 --> ing9_MnCl2_4H2O
CHEBI_86368["CHEBI:86368"]
ing9_MnCl2_4H2O -.-> CHEBI_86368
ing10_CoCl2_6H2O["CoCl2・6H2O"]
CultureMech_007539 --> ing10_CoCl2_6H2O
CHEBI_35696["CHEBI:35696"]
ing10_CoCl2_6H2O -.-> CHEBI_35696
ing11_NiCl2_6H2O["NiCl2・6H2O"]
CultureMech_007539 --> ing11_NiCl2_6H2O
CHEBI_34887["CHEBI:34887"]
ing11_NiCl2_6H2O -.-> CHEBI_34887
ing12_ZnSO4_7H2O["ZnSO4・7H2O"]
CultureMech_007539 --> ing12_ZnSO4_7H2O
CHEBI_32312["CHEBI:32312"]
ing12_ZnSO4_7H2O -.-> CHEBI_32312
ing13_CuCl2_2H2O["CuCl2・2H2O"]
CultureMech_007539 --> ing13_CuCl2_2H2O
CHEBI_86318["CHEBI:86318"]
ing13_CuCl2_2H2O -.-> CHEBI_86318
Ingredients (14)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
901.0 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component [Merged 2 duplicates: 900.0, 1.0] |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
117 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component |
| 4 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.2 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.1 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Simple component, Inorganic compound, Defined component |
| 6 | Yeast extract (BD-Difco) | 5 G_PER_L | Properties: Undefined component | |
| 7 | Peptone (Oxoid) | 5 G_PER_L | Properties: Undefined component | |
| 8 |
Na2MoO4・2H2O
2H2O.MoO4.2Na 241.946 g/mol
|
3 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 9 | H3BO4 | 30 G_PER_L | Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component | |
| 10 |
MnCl2・4H2O
Cl2Mn.4H2O 197.904 g/mol
|
3 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 11 |
CoCl2・6H2O
2Cl.Co 129.839 g/mol
|
10 G_PER_L |
CHEBI:35696
cobalt dichloride
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 12 |
NiCl2・6H2O
Cl2Ni 129.599 g/mol
|
2 G_PER_L |
CHEBI:34887
nickel dichloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 13 |
ZnSO4・7H2O
7H2O.O4S.Zn 287.558 g/mol
|
10 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound |
| 14 |
CuCl2・2H2O
Cl2Cu.2H2O 170.482 g/mol
|
1 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
Solutions
Trace mineral solution (see below)
Dose: 10 G_PER_L
10% (w/v) Na2CO3 solution
Dose: 100 G_PER_L
Role: Buffer; Properties: Defined component, Inorganic compound, Solution
10% (w/v) Glucose solution
Dose: 5 G_PER_L
Role: Carbon source; Properties: Defined component, Solution, Organic compound
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.776972Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1025 |
| 2026-01-28T19:48:28.431557Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-09T08:04:47.065449+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 3 solution(s) from ingredients |
| 2026-03-13T03:09:17.727623Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:49.495504Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007539 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:25.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:07.838045+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Alkalinus Abyssiniese Medium" to "alkalinus_abyssiniese_medium" for consistent matching |
| 2026-05-16T09:03:06.954692+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:29.772651+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:20.701503+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:46.720844+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |