Overview
- External ontology
- TOGO:M1035 — Kosmotoga Pacifica Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M1035 Original source: JCM - JCM_M982 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=982
Composition
flowchart LR
CultureMech_007550["kosmotoga_pacifica_medium"]
ing0_yeast_extract["yeast extract"]
CultureMech_007550 --> ing0_yeast_extract
ing1_L_cystine["L-cystine"]
CultureMech_007550 --> ing1_L_cystine
CHEBI_16283["CHEBI:16283"]
ing1_L_cystine -.-> CHEBI_16283
ing2_Carbon_dioxide_gas["Carbon dioxide gas"]
CultureMech_007550 --> ing2_Carbon_dioxide_gas
CHEBI_16526["CHEBI:16526"]
ing2_Carbon_dioxide_gas -.-> CHEBI_16526
ing3_Nitrogen_gas["Nitrogen gas"]
CultureMech_007550 --> ing3_Nitrogen_gas
CHEBI_17997["CHEBI:17997"]
ing3_Nitrogen_gas -.-> CHEBI_17997
Ingredients (4)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | yeast extract | 3 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 2 |
L-cystine
C6H12N2O4S2 240.306 g/mol
|
2.4 G_PER_L |
CHEBI:16283
L-cystine
|
Role: Nitrogen source; Properties: Defined component, Simple component, Organic compound |
| 3 |
Carbon dioxide gas
CO2 44.009 g/mol
|
variable VARIABLE |
CHEBI:16526
carbon dioxide
|
Properties: ガス |
| 4 |
Nitrogen gas
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: ガス |
Solutions
METHANOCALDOCOCCUS JANNASCHII MEDIUM (see Medium [M225])
Dose: 1 G_PER_L
Cross-reference to Medium M225
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.798360Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1035 |
| 2026-01-28T19:48:32.897977Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas |
| 2026-03-09T08:04:54.443394+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T06:19:49.589195Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007550 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-03-17T06:30:35.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:07.935491+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Kosmotoga Pacifica Medium" to "kosmotoga_pacifica_medium" for consistent matching |
| 2026-05-16T09:03:07.052485+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:29.878252+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 1 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |