mpycy_agar_medium

CultureMech:007620 bacterial COMPLEX SOLID_AGAR
Original name: MPYCY Agar Medium

Overview

External ontology
TOGO:M1101 — MPYCY Agar Medium
Applications
  • Microbial cultivation
pH range
{'min': 7.6, 'max': 7.8}
Notes
TOGO M1101/M1102 record JCM Medium 1037 with maltose monohydrate, sodium pyruvate, Casamino acids, yeast extract, Solution A from M1100/JCM 1036, Solution B from M1100/JCM 1036, and distilled water; the M1101 agar variant also lists 12 g/L agar if necessary. JCM 1037 adjusts pH to 7.6-7.8 for agar plates or to 7.4-7.6 for liquid medium, autoclaves at 115 degrees C for 20 min, and adds Solution B aseptically after separate filter sterilization. This record uses the agar-plate pH range.

Composition

flowchart LR
    CultureMech_007620["mpycy_agar_medium"]
    ing0_Maltose_monohydrate["Maltose monohydrate"]
    CultureMech_007620 --> ing0_Maltose_monohydrate
    CHEBI_17306["CHEBI:17306"]
    ing0_Maltose_monohydrate -.-> CHEBI_17306
    ing1_Sodium_pyruvate["Sodium pyruvate"]
    CultureMech_007620 --> ing1_Sodium_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing1_Sodium_pyruvate -.-> CHEBI_50144
    ing2_Casamino_acids__BD_Difco_["Casamino acids (BD-Difco)"]
    CultureMech_007620 --> ing2_Casamino_acids__BD_Difco_
    ing3_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
    CultureMech_007620 --> ing3_Yeast_extract__BD_Difco_
    ing4_Agar__if_necessary_["Agar (if necessary)"]
    CultureMech_007620 --> ing4_Agar__if_necessary_
    CHEBI_2509["CHEBI:2509"]
    ing4_Agar__if_necessary_ -.-> CHEBI_2509
    ing5_Distilled_water["Distilled water"]
    CultureMech_007620 --> ing5_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing5_Distilled_water -.-> CHEBI_15377

Ingredients (6)

# Ingredient Concentration Ontology Notes
1 Maltose monohydrate
C12H22O11 342.297 g/mol
0.5 G_PER_L CHEBI:17306
maltose
JCM Medium 1037 lists 0.5 g/L Maltose monohydrate.
2 Sodium pyruvate
C3H3O3.Na 110.044 g/mol
0.4 G_PER_L CHEBI:50144
sodium pyruvate
JCM Medium 1037 lists 0.4 g/L Sodium pyruvate.
3 Casamino acids (BD-Difco) 0.3 G_PER_L JCM Medium 1037 lists 0.3 g/L Casamino acids (BD-Difco).
4 Yeast extract (BD-Difco) 0.3 G_PER_L JCM Medium 1037 lists 0.3 g/L Yeast extract (BD-Difco).
5 Agar (if necessary) 12.0 G_PER_L CHEBI:2509
agar
JCM Medium 1037 lists 12.0 g/L Agar (if necessary).
6 Distilled water
H2O 18.015 g/mol
1.0 L CHEBI:15377
water
JCM Medium 1037 lists 1.0 L Distilled water.

Preparation

  1. Mix maltose monohydrate, sodium pyruvate, Casamino acids, yeast extract, Solution A, optional agar, and distilled water.
  2. Before autoclaving, adjust to pH 7.6-7.8 for agar plates or pH 7.4-7.6 for liquid medium.
  3. Autoclave at 115 degrees C for 20 min.
  4. Mix Solution B and filter-sterilize it just before addition.
  5. Add filter-sterilized Solution B aseptically after autoclaving.

Solutions

Solution A

Dose: 5.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
(NH4)2SO4 20.0 G_PER_L TOGO M1100 / JCM Medium 1036 lists 20.0 g/L (NH4)2SO4.
MgSO4 x 7H2O 10.0 G_PER_L TOGO M1100 / JCM Medium 1036 lists 10.0 g/L MgSO4 x 7H2O.
KCl 10.0 G_PER_L TOGO M1100 / JCM Medium 1036 lists 10.0 g/L KCl.
CaCl2 x 2H2O 4.0 G_PER_L TOGO M1100 / JCM Medium 1036 lists 4.0 g/L CaCl2 x 2H2O.
Distilled water 1.0 L TOGO M1100 / JCM Medium 1036 lists 1.0 L Distilled water.
JCM Medium 1037 adds 5.0 ml/L Solution A from M1100/JCM 1036.

Solution B

Dose: 8.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
0.5 M Na2HPO4-NaH2PO4 buffer (pH 7.3) 2.0 ML_PER_L TOGO M1100 / JCM Medium 1036 mixes 2.0 ml 0.5 M Na2HPO4-NaH2PO4 buffer at pH 7.3 into Solution B.
Vitamins mix solution 5.0 ML_PER_L TOGO M1100 / JCM Medium 1036 lists 5.0 ml Vitamins mix solution per 8.0 ml Solution B.
FeCl3 solution 1.0 ML_PER_L TOGO M1100 / JCM Medium 1036 lists 1.0 ml FeCl3 solution per 8.0 ml Solution B.
JCM Medium 1037 adds 8.0 ml/L filter-sterilized Solution B from M1100/JCM 1036 after autoclaving.

Vitamins mix solution

Dose: 5.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Riboflavin 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Riboflavin.
Thiamine HCl 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Thiamine HCl.
Nicotinic acid 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Nicotinic acid.
Calcium pantothenate 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Calcium pantothenate.
Myo-inositol 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Myo-inositol.
p-Aminobenzoic acid 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L p-Aminobenzoic acid.
Pyridoxine HCl 20.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 20.0 mg/L Pyridoxine HCl.
Folic acid 1.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 1.0 mg/L Folic acid.
Vitamin B12 1.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 1.0 mg/L Vitamin B12.
Biotin 1.0 MG_PER_L TOGO M290 / JCM Medium 296 lists 1.0 mg/L Biotin.
Distilled water 1.0 L TOGO M290 / JCM Medium 296 lists 1.0 L Distilled water.
TOGO M1100 / JCM Medium 1036 adds 5.0 ml Vitamins mix solution from M290/JCM 296 per 8.0 ml Solution B.

FeCl3 solution

Dose: 1.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
FeCl3 x 6H2O 0.5 G_PER_L TOGO M1100 / JCM Medium 1036 lists 0.15 g FeCl3 x 6H2O in 300.0 ml water, equivalent to 0.5 g/L.
TOGO M1100 / JCM Medium 1036 adds 1.0 ml FeCl3 solution per 8.0 ml Solution B.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:53.920014Z togo-import Imported from TOGO Medium Source: JCM, ID: M1101
2026-01-28T19:48:11.697693Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-03-09T08:04:19.216410+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 2 solution(s) from ingredients
2026-03-13T06:19:50.112995Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007620
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name
2026-03-17T06:29:50.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:08.475096+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MPYCY Agar Medium" to "mpycy_agar_medium" for consistent matching
2026-05-16T09:03:07.576326+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=1
2026-06-05T07:40:30.436762+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-09-11T00:00:00-07:00 repair_togo_m1101_m1102_score15.py RESOLVED_TOGO_MPYCY_SCORE15 TOGO M1101/M1102 record JCM Medium 1037 with maltose monohydrate, sodium pyruvate, Casamino acids, yeast extract, Solution A from M1100/JCM 1036, Solution B from M1100/JCM 1036, and distilled water; the M1101 agar variant also lists 12 g/L agar if necessary. JCM 1037 adjusts pH to 7.6-7.8 for agar plates or to 7.4-7.6 for liquid medium, autoclaves at 115 degrees C for 20 min, and adds Solution B aseptically after separate filter sterilization.