Overview
- External ontology
- TOGO:M1107 — Calroanaerobacter Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M1107 Original source: JCM - JCM_M1042 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1042
Composition
flowchart LR
CultureMech_007626["calroanaerobacter_medium"]
ing0_Sodium_pyruvate["Sodium pyruvate"]
CultureMech_007626 --> ing0_Sodium_pyruvate
CHEBI_50144["CHEBI:50144"]
ing0_Sodium_pyruvate -.-> CHEBI_50144
ing1_PIPES["PIPES"]
CultureMech_007626 --> ing1_PIPES
CHEBI_39033["CHEBI:39033"]
ing1_PIPES -.-> CHEBI_39033
ing2_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_007626 --> ing2_Yeast_extract__BD_Difco_
ing3_Tryptone__BD_Difco_["Tryptone (BD-Difco)"]
CultureMech_007626 --> ing3_Tryptone__BD_Difco_
ing4_Artificial_seawater__see_below_["Artificial seawater (see below)"]
CultureMech_007626 --> ing4_Artificial_seawater__see_below_
ing5_N2["N2"]
CultureMech_007626 --> ing5_N2
CHEBI_17997["CHEBI:17997"]
ing5_N2 -.-> CHEBI_17997
ing6_Distilled_water["Distilled water"]
CultureMech_007626 --> ing6_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing6_Distilled_water -.-> CHEBI_15377
ing7_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_007626 --> ing7_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing7_MgSO4_7H2O -.-> CHEBI_31795
ing8_NaCl["NaCl"]
CultureMech_007626 --> ing8_NaCl
CHEBI_26710["CHEBI:26710"]
ing8_NaCl -.-> CHEBI_26710
ing9_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_007626 --> ing9_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing9_CaCl2_2H2O -.-> CHEBI_86158
ing10_KH2PO4["KH2PO4"]
CultureMech_007626 --> ing10_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing10_KH2PO4 -.-> CHEBI_63036
ing11_MgCl2_6H2O["MgCl2・6H2O"]
CultureMech_007626 --> ing11_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing11_MgCl2_6H2O -.-> CHEBI_86345
ing12_KCl["KCl"]
CultureMech_007626 --> ing12_KCl
CHEBI_32588["CHEBI:32588"]
ing12_KCl -.-> CHEBI_32588
ing13_NaHCO3["NaHCO3"]
CultureMech_007626 --> ing13_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing13_NaHCO3 -.-> CHEBI_32139
ing14__NH4_2SO4["(NH4)2SO4"]
CultureMech_007626 --> ing14__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing14__NH4_2SO4 -.-> CHEBI_62946
ing15_NaBr["NaBr"]
CultureMech_007626 --> ing15_NaBr
CHEBI_63004["CHEBI:63004"]
ing15_NaBr -.-> CHEBI_63004
ing16_SrCl2_6H2O["SrCl2・6H2O"]
CultureMech_007626 --> ing16_SrCl2_6H2O
CHEBI_36385["CHEBI:36385"]
ing16_SrCl2_6H2O -.-> CHEBI_36385
ing17_Ammonium_Fe_III__citrate["Ammonium Fe(III) citrate"]
CultureMech_007626 --> ing17_Ammonium_Fe_III__citrate
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Sodium pyruvate
C3H3O3.Na 110.044 g/mol
|
5 G_PER_L |
CHEBI:50144
sodium pyruvate
|
Role: Carbon source; Properties: Organic compound, Defined component, Simple component |
| 2 | PIPES | 3.46 G_PER_L |
CHEBI:39033
PIPES
|
Role: Buffer; Properties: Organic compound, Defined component, Simple component |
| 3 | Yeast extract (BD-Difco) | 2 G_PER_L | Properties: Undefined component | |
| 4 | Tryptone (BD-Difco) | 2 G_PER_L | Properties: Undefined component | |
| 5 | Artificial seawater (see below) | 1 G_PER_L | ||
| 6 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: Gas |
| 7 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Defined component, Simple component |
| 8 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
6 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 9 |
NaCl
Cl.Na 58.443 g/mol
|
22 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 10 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.3 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 11 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.42 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 12 |
MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
3 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 13 |
KCl
Cl.K 74.551 g/mol
|
0.5 G_PER_L |
CHEBI:32588
potassium chloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 14 |
NaHCO3
CHO3.Na 84.006 g/mol
|
0.2 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 15 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
1 G_PER_L |
CHEBI:62946
ammonium sulfate
|
Role: Nitrogen source; Properties: Inorganic compound, Defined component, Simple component |
| 16 |
NaBr
Br.Na 102.894 g/mol
|
0.05 G_PER_L |
CHEBI:63004
sodium bromide
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 17 |
SrCl2・6H2O
Cl2Sr.6H2O 266.616 g/mol
|
0.02 G_PER_L |
CHEBI:36385
strontium dichloride hexahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 18 | Ammonium Fe(III) citrate | 0.01 G_PER_L | Role: Nitrogen source; Properties: Organic compound, Defined component, Simple component |
Solutions
Trace vitamins (see Medium [M190])
Dose: 5 G_PER_L
Cross-reference to Medium M190
Trace minerals (see Medium [M142])
Dose: 5 G_PER_L
Cross-reference to Medium M142
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.931065Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1107 |
| 2026-01-28T19:48:29.513829Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2 |
| 2026-03-09T08:04:49.027560+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 2 solution(s) from ingredients |
| 2026-03-13T06:19:50.163869Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007626 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name |
| 2026-03-17T06:30:28.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:08.526725+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Calroanaerobacter Medium" to "calroanaerobacter_medium" for consistent matching |
| 2026-05-16T09:03:07.634086+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:30.495792+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:21.269011+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:46.934133+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |