Overview
- External ontology
- TOGO:M1126 — PYGV Marine Medium (B)
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.2, 'max': 7.4}
- Notes
- TOGO M1126 records the liquid JCM Medium 1059 PYGV Marine Medium (B) formulation with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, and KOH for optional pH adjustment. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.
Composition
flowchart LR
CultureMech_007647["pygv_marine_medium_b"]
ing0_Bacto_peptone__BD_Difco_["Bacto peptone (BD-Difco)"]
CultureMech_007647 --> ing0_Bacto_peptone__BD_Difco_
ing1_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_007647 --> ing1_Yeast_extract__BD_Difco_
ing2_Distilled_water["Distilled water"]
CultureMech_007647 --> ing2_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing2_Distilled_water -.-> CHEBI_15377
ing3_KOH["KOH"]
CultureMech_007647 --> ing3_KOH
CHEBI_32035["CHEBI:32035"]
ing3_KOH -.-> CHEBI_32035
Ingredients (4)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Bacto peptone (BD-Difco) | 0.25 G_PER_L | TOGO M1126 / JCM Medium 1059 lists 0.25 g/L Bacto peptone (BD-Difco). | |
| 2 | Yeast extract (BD-Difco) | 0.25 G_PER_L | TOGO M1126 / JCM Medium 1059 lists 0.25 g/L Yeast extract (BD-Difco). | |
| 3 |
Distilled water
H2O 18.015 g/mol
|
710.0 ML_PER_L |
CHEBI:15377
water
|
TOGO M1126 / JCM Medium 1059 lists 710.0 ml/L Distilled water. |
| 4 |
KOH
HO.K 56.105 g/mol
|
variable VARIABLE |
CHEBI:32035
potassium hydroxide
|
JCM Medium 1059 adjusts the medium to pH 7.2-7.4 with sterile KOH, if necessary. |
Preparation
- Mix peptone, yeast extract, mineral salt solution, artificial seawater, and distilled water.
- Gently heat and bring to a boil.
- Autoclave at 121 degrees C for 15 min.
- Cool to 45-50 degrees C.
- Aseptically add the filter-sterilized glucose solution and vitamin solution.
- Adjust to pH 7.2-7.4 with sterile KOH, if necessary.
Solutions
Mineral salt solution
Dose: 20.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| MgSO4 x 7H2O | 29.7 G_PER_L | TOGO M299 / JCM Medium 304 lists 29.7 g/L MgSO4 x 7H2O. |
| Nitrilotriacetic acid | 10.0 G_PER_L | TOGO M299 / JCM Medium 304 lists 10.0 g/L Nitrilotriacetic acid. |
| CaCl2 x 2H2O | 3.34 G_PER_L | TOGO M299 / JCM Medium 304 lists 3.34 g/L CaCl2 x 2H2O. |
| FeSO4 x 7H2O | 99.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 99.0 mg/L FeSO4 x 7H2O. |
| Na2MoO4 x 2H2O | 13.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 13.0 mg/L Na2MoO4 x 2H2O. |
| Metals 44 | 50.0 ML_PER_L | JCM Medium 304 adds 50.0 ml/L Metals 44 from JCM Medium 149. |
| Distilled water | 950.0 ML_PER_L | TOGO M299 / JCM Medium 304 lists 950.0 ml/L Distilled water. |
JCM Medium 1059 adds 20.0 ml/L Mineral salt solution.
2.5% Glucose solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Glucose | 2.5 PERCENT_W_V | TOGO M1126 / JCM Medium 1059 lists 2.5 % w/v Glucose. |
JCM Medium 1059 adds 10.0 ml/L 2.5% Glucose solution.
Vitamin solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Biotin | 2.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 2.0 mg/L Biotin. |
| Folic acid | 2.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 2.0 mg/L Folic acid. |
| Pyridoxine HCl | 10.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 10.0 mg/L Pyridoxine HCl. |
| Riboflavin | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Riboflavin. |
| Thiamine HCl | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Thiamine HCl. |
| Nicotinamide | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Nicotinamide. |
| Calcium pantothenate | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Calcium pantothenate. |
| Vitamin B12 | 0.1 MG_PER_L | TOGO M299 / JCM Medium 304 lists 0.1 mg/L Vitamin B12. |
| p-Aminobenzoic acid | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L p-Aminobenzoic acid. |
| Distilled water | 1.0 L | TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water. |
JCM Medium 1059 adds 10.0 ml/L Vitamin solution.
Artificial seawater
Dose: 250.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaCl | 23.477 G_PER_L | TOGO M299 / JCM Medium 304 lists 23.477 g/L NaCl. |
| Na2SO4 | 3.917 G_PER_L | TOGO M299 / JCM Medium 304 lists 3.917 g/L Na2SO4. |
| MgCl2 x 6H2O | 4.981 G_PER_L | TOGO M299 / JCM Medium 304 lists 4.981 g/L MgCl2 x 6H2O. |
| CaCl2 x 2H2O | 1.102 G_PER_L | TOGO M299 / JCM Medium 304 lists 1.102 g/L CaCl2 x 2H2O. |
| NaHCO3 | 192.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 192.0 mg/L NaHCO3. |
| KCl | 664.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 664.0 mg/L KCl. |
| KBr | 6.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 6.0 mg/L KBr. |
| H3BO3 | 26.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 26.0 mg/L H3BO3. |
| SrCl2 x 6H2O | 24.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 24.0 mg/L SrCl2 x 6H2O. |
| NaF | 3.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 3.0 mg/L NaF. |
| Distilled water | 1.0 L | TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water. |
JCM Medium 1059 adds 250.0 ml/L Artificial seawater.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.969554Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1126 |
| 2026-01-28T19:48:18.268132Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: KOH |
| 2026-03-09T08:04:30.265399+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 4 solution(s) from ingredients |
| 2026-03-13T06:19:50.318995Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007647 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:04.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:08.687052+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PYGV Marine Medium (B)" to "pygv_marine_medium_b" for consistent matching |
| 2026-05-16T09:04:29.891876+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:41:43.171867+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-12T00:00:00-07:00 | repair_togo_m1126_pygv_marine_medium_b_score15.py | RESOLVED_TOGO_M1126_PYGV_MARINE_B_SCORE15 | TOGO M1126 records the liquid JCM Medium 1059 PYGV Marine Medium (B) formulation with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, and KOH for optional pH adjustment. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary. |