pygv_marine_medium_b

CultureMech:007647 bacterial COMPLEX LIQUID
Original name: PYGV Marine Medium (B)

Overview

External ontology
TOGO:M1126 — PYGV Marine Medium (B)
Applications
  • Microbial cultivation
pH range
{'min': 7.2, 'max': 7.4}
Notes
TOGO M1126 records the liquid JCM Medium 1059 PYGV Marine Medium (B) formulation with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, and KOH for optional pH adjustment. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.

Composition

flowchart LR
    CultureMech_007647["pygv_marine_medium_b"]
    ing0_Bacto_peptone__BD_Difco_["Bacto peptone (BD-Difco)"]
    CultureMech_007647 --> ing0_Bacto_peptone__BD_Difco_
    ing1_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
    CultureMech_007647 --> ing1_Yeast_extract__BD_Difco_
    ing2_Distilled_water["Distilled water"]
    CultureMech_007647 --> ing2_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing2_Distilled_water -.-> CHEBI_15377
    ing3_KOH["KOH"]
    CultureMech_007647 --> ing3_KOH
    CHEBI_32035["CHEBI:32035"]
    ing3_KOH -.-> CHEBI_32035

Ingredients (4)

# Ingredient Concentration Ontology Notes
1 Bacto peptone (BD-Difco) 0.25 G_PER_L TOGO M1126 / JCM Medium 1059 lists 0.25 g/L Bacto peptone (BD-Difco).
2 Yeast extract (BD-Difco) 0.25 G_PER_L TOGO M1126 / JCM Medium 1059 lists 0.25 g/L Yeast extract (BD-Difco).
3 Distilled water
H2O 18.015 g/mol
710.0 ML_PER_L CHEBI:15377
water
TOGO M1126 / JCM Medium 1059 lists 710.0 ml/L Distilled water.
4 KOH
HO.K 56.105 g/mol
variable VARIABLE CHEBI:32035
potassium hydroxide
JCM Medium 1059 adjusts the medium to pH 7.2-7.4 with sterile KOH, if necessary.

Preparation

  1. Mix peptone, yeast extract, mineral salt solution, artificial seawater, and distilled water.
  2. Gently heat and bring to a boil.
  3. Autoclave at 121 degrees C for 15 min.
  4. Cool to 45-50 degrees C.
  5. Aseptically add the filter-sterilized glucose solution and vitamin solution.
  6. Adjust to pH 7.2-7.4 with sterile KOH, if necessary.

Solutions

Mineral salt solution

Dose: 20.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
MgSO4 x 7H2O 29.7 G_PER_L TOGO M299 / JCM Medium 304 lists 29.7 g/L MgSO4 x 7H2O.
Nitrilotriacetic acid 10.0 G_PER_L TOGO M299 / JCM Medium 304 lists 10.0 g/L Nitrilotriacetic acid.
CaCl2 x 2H2O 3.34 G_PER_L TOGO M299 / JCM Medium 304 lists 3.34 g/L CaCl2 x 2H2O.
FeSO4 x 7H2O 99.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 99.0 mg/L FeSO4 x 7H2O.
Na2MoO4 x 2H2O 13.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 13.0 mg/L Na2MoO4 x 2H2O.
Metals 44 50.0 ML_PER_L JCM Medium 304 adds 50.0 ml/L Metals 44 from JCM Medium 149.
Distilled water 950.0 ML_PER_L TOGO M299 / JCM Medium 304 lists 950.0 ml/L Distilled water.
JCM Medium 1059 adds 20.0 ml/L Mineral salt solution.

2.5% Glucose solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Glucose 2.5 PERCENT_W_V TOGO M1126 / JCM Medium 1059 lists 2.5 % w/v Glucose.
JCM Medium 1059 adds 10.0 ml/L 2.5% Glucose solution.

Vitamin solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Biotin 2.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 2.0 mg/L Biotin.
Folic acid 2.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 2.0 mg/L Folic acid.
Pyridoxine HCl 10.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 10.0 mg/L Pyridoxine HCl.
Riboflavin 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Riboflavin.
Thiamine HCl 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Thiamine HCl.
Nicotinamide 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Nicotinamide.
Calcium pantothenate 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Calcium pantothenate.
Vitamin B12 0.1 MG_PER_L TOGO M299 / JCM Medium 304 lists 0.1 mg/L Vitamin B12.
p-Aminobenzoic acid 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L p-Aminobenzoic acid.
Distilled water 1.0 L TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water.
JCM Medium 1059 adds 10.0 ml/L Vitamin solution.

Artificial seawater

Dose: 250.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
NaCl 23.477 G_PER_L TOGO M299 / JCM Medium 304 lists 23.477 g/L NaCl.
Na2SO4 3.917 G_PER_L TOGO M299 / JCM Medium 304 lists 3.917 g/L Na2SO4.
MgCl2 x 6H2O 4.981 G_PER_L TOGO M299 / JCM Medium 304 lists 4.981 g/L MgCl2 x 6H2O.
CaCl2 x 2H2O 1.102 G_PER_L TOGO M299 / JCM Medium 304 lists 1.102 g/L CaCl2 x 2H2O.
NaHCO3 192.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 192.0 mg/L NaHCO3.
KCl 664.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 664.0 mg/L KCl.
KBr 6.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 6.0 mg/L KBr.
H3BO3 26.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 26.0 mg/L H3BO3.
SrCl2 x 6H2O 24.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 24.0 mg/L SrCl2 x 6H2O.
NaF 3.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 3.0 mg/L NaF.
Distilled water 1.0 L TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water.
JCM Medium 1059 adds 250.0 ml/L Artificial seawater.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:53.969554Z togo-import Imported from TOGO Medium Source: JCM, ID: M1126
2026-01-28T19:48:18.268132Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: KOH
2026-03-09T08:04:30.265399+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 4 solution(s) from ingredients
2026-03-13T06:19:50.318995Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007647
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:30:04.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:08.687052+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "PYGV Marine Medium (B)" to "pygv_marine_medium_b" for consistent matching
2026-05-16T09:04:29.891876+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:41:43.171867+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-09-12T00:00:00-07:00 repair_togo_m1126_pygv_marine_medium_b_score15.py RESOLVED_TOGO_M1126_PYGV_MARINE_B_SCORE15 TOGO M1126 records the liquid JCM Medium 1059 PYGV Marine Medium (B) formulation with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, and KOH for optional pH adjustment. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.