pygv_marine_medium_b

CultureMech:007648 bacterial COMPLEX SOLID_AGAR
Original name: PYGV Marine Medium (B)

Overview

External ontology
TOGO:M1127 — PYGV Marine Medium (B)
Applications
  • Microbial cultivation
pH range
{'min': 7.2, 'max': 7.4}
Notes
TOGO M1127 records JCM Medium 1059 with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, KOH for optional pH adjustment, and 15 g/L agar for the solid formulation. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.

Composition

flowchart LR
    CultureMech_007648["pygv_marine_medium_b"]
    ing0_Bacto_peptone__BD_Difco_["Bacto peptone (BD-Difco)"]
    CultureMech_007648 --> ing0_Bacto_peptone__BD_Difco_
    ing1_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
    CultureMech_007648 --> ing1_Yeast_extract__BD_Difco_
    ing2_Agar["Agar"]
    CultureMech_007648 --> ing2_Agar
    CHEBI_2509["CHEBI:2509"]
    ing2_Agar -.-> CHEBI_2509
    ing3_Distilled_water["Distilled water"]
    CultureMech_007648 --> ing3_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing3_Distilled_water -.-> CHEBI_15377
    ing4_KOH["KOH"]
    CultureMech_007648 --> ing4_KOH
    CHEBI_32035["CHEBI:32035"]
    ing4_KOH -.-> CHEBI_32035

Ingredients (5)

# Ingredient Concentration Ontology Notes
1 Bacto peptone (BD-Difco) 0.25 G_PER_L TOGO M1127 / JCM Medium 1059 lists 0.25 g/L Bacto peptone (BD-Difco).
2 Yeast extract (BD-Difco) 0.25 G_PER_L TOGO M1127 / JCM Medium 1059 lists 0.25 g/L Yeast extract (BD-Difco).
3 Agar 15.0 G_PER_L CHEBI:2509
agar
TOGO M1127 / JCM Medium 1059 lists 15.0 g/L Agar.
4 Distilled water
H2O 18.015 g/mol
710.0 ML_PER_L CHEBI:15377
water
TOGO M1127 / JCM Medium 1059 lists 710.0 ml/L Distilled water.
5 KOH
HO.K 56.105 g/mol
variable VARIABLE CHEBI:32035
potassium hydroxide
JCM Medium 1059 adjusts the medium to pH 7.2-7.4 with sterile KOH, if necessary.

Preparation

  1. Mix peptone, yeast extract, mineral salt solution, artificial seawater, agar, and distilled water.
  2. Gently heat and bring to a boil.
  3. Autoclave at 121 degrees C for 15 min.
  4. Cool to 45-50 degrees C.
  5. Aseptically add the filter-sterilized glucose solution and vitamin solution.
  6. Adjust to pH 7.2-7.4 with sterile KOH, if necessary.

Solutions

Mineral salt solution

Dose: 20.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
MgSO4 x 7H2O 29.7 G_PER_L TOGO M299 / JCM Medium 304 lists 29.7 g/L MgSO4 x 7H2O.
Nitrilotriacetic acid 10.0 G_PER_L TOGO M299 / JCM Medium 304 lists 10.0 g/L Nitrilotriacetic acid.
CaCl2 x 2H2O 3.34 G_PER_L TOGO M299 / JCM Medium 304 lists 3.34 g/L CaCl2 x 2H2O.
FeSO4 x 7H2O 99.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 99.0 mg/L FeSO4 x 7H2O.
Na2MoO4 x 2H2O 13.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 13.0 mg/L Na2MoO4 x 2H2O.
Metals 44 50.0 ML_PER_L JCM Medium 304 adds 50.0 ml/L Metals 44 from JCM Medium 149.
Distilled water 950.0 ML_PER_L TOGO M299 / JCM Medium 304 lists 950.0 ml/L Distilled water.
JCM Medium 1059 adds 20.0 ml/L Mineral salt solution.

2.5% Glucose solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Glucose 2.5 PERCENT_W_V TOGO M1127 / JCM Medium 1059 lists 2.5 % w/v Glucose.
JCM Medium 1059 adds 10.0 ml/L 2.5% Glucose solution.

Vitamin solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Biotin 2.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 2.0 mg/L Biotin.
Folic acid 2.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 2.0 mg/L Folic acid.
Pyridoxine HCl 10.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 10.0 mg/L Pyridoxine HCl.
Riboflavin 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Riboflavin.
Thiamine HCl 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Thiamine HCl.
Nicotinamide 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Nicotinamide.
Calcium pantothenate 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L Calcium pantothenate.
Vitamin B12 0.1 MG_PER_L TOGO M299 / JCM Medium 304 lists 0.1 mg/L Vitamin B12.
p-Aminobenzoic acid 5.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 5.0 mg/L p-Aminobenzoic acid.
Distilled water 1.0 L TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water.
JCM Medium 1059 adds 10.0 ml/L Vitamin solution.

Artificial seawater

Dose: 250.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
NaCl 23.477 G_PER_L TOGO M299 / JCM Medium 304 lists 23.477 g/L NaCl.
Na2SO4 3.917 G_PER_L TOGO M299 / JCM Medium 304 lists 3.917 g/L Na2SO4.
MgCl2 x 6H2O 4.981 G_PER_L TOGO M299 / JCM Medium 304 lists 4.981 g/L MgCl2 x 6H2O.
CaCl2 x 2H2O 1.102 G_PER_L TOGO M299 / JCM Medium 304 lists 1.102 g/L CaCl2 x 2H2O.
NaHCO3 192.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 192.0 mg/L NaHCO3.
KCl 664.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 664.0 mg/L KCl.
KBr 6.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 6.0 mg/L KBr.
H3BO3 26.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 26.0 mg/L H3BO3.
SrCl2 x 6H2O 24.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 24.0 mg/L SrCl2 x 6H2O.
NaF 3.0 MG_PER_L TOGO M299 / JCM Medium 304 lists 3.0 mg/L NaF.
Distilled water 1.0 L TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water.
JCM Medium 1059 adds 250.0 ml/L Artificial seawater.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:53.970762Z togo-import Imported from TOGO Medium Source: JCM, ID: M1127
2026-01-28T19:48:31.344741Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: KOH
2026-03-09T08:04:52.215175+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 4 solution(s) from ingredients
2026-03-13T06:19:50.324666Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007648
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:30:32.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:08.693275+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "PYGV Marine Medium (B)" to "pygv_marine_medium_b" for consistent matching
2026-05-16T09:03:07.742176+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:30.614951+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-09-11T00:00:00-07:00 repair_togo_m1127_score15.py RESOLVED_TOGO_M1127_SCORE15 TOGO M1127 records JCM Medium 1059 with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, KOH for optional pH adjustment, and 15 g/L agar for the solid formulation. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.