Overview
- External ontology
- TOGO:M1127 — PYGV Marine Medium (B)
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.2, 'max': 7.4}
- Notes
- TOGO M1127 records JCM Medium 1059 with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, KOH for optional pH adjustment, and 15 g/L agar for the solid formulation. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary.
Composition
flowchart LR
CultureMech_007648["pygv_marine_medium_b"]
ing0_Bacto_peptone__BD_Difco_["Bacto peptone (BD-Difco)"]
CultureMech_007648 --> ing0_Bacto_peptone__BD_Difco_
ing1_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_007648 --> ing1_Yeast_extract__BD_Difco_
ing2_Agar["Agar"]
CultureMech_007648 --> ing2_Agar
CHEBI_2509["CHEBI:2509"]
ing2_Agar -.-> CHEBI_2509
ing3_Distilled_water["Distilled water"]
CultureMech_007648 --> ing3_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing3_Distilled_water -.-> CHEBI_15377
ing4_KOH["KOH"]
CultureMech_007648 --> ing4_KOH
CHEBI_32035["CHEBI:32035"]
ing4_KOH -.-> CHEBI_32035
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Bacto peptone (BD-Difco) | 0.25 G_PER_L | TOGO M1127 / JCM Medium 1059 lists 0.25 g/L Bacto peptone (BD-Difco). | |
| 2 | Yeast extract (BD-Difco) | 0.25 G_PER_L | TOGO M1127 / JCM Medium 1059 lists 0.25 g/L Yeast extract (BD-Difco). | |
| 3 | Agar | 15.0 G_PER_L |
CHEBI:2509
agar
|
TOGO M1127 / JCM Medium 1059 lists 15.0 g/L Agar. |
| 4 |
Distilled water
H2O 18.015 g/mol
|
710.0 ML_PER_L |
CHEBI:15377
water
|
TOGO M1127 / JCM Medium 1059 lists 710.0 ml/L Distilled water. |
| 5 |
KOH
HO.K 56.105 g/mol
|
variable VARIABLE |
CHEBI:32035
potassium hydroxide
|
JCM Medium 1059 adjusts the medium to pH 7.2-7.4 with sterile KOH, if necessary. |
Preparation
- Mix peptone, yeast extract, mineral salt solution, artificial seawater, agar, and distilled water.
- Gently heat and bring to a boil.
- Autoclave at 121 degrees C for 15 min.
- Cool to 45-50 degrees C.
- Aseptically add the filter-sterilized glucose solution and vitamin solution.
- Adjust to pH 7.2-7.4 with sterile KOH, if necessary.
Solutions
Mineral salt solution
Dose: 20.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| MgSO4 x 7H2O | 29.7 G_PER_L | TOGO M299 / JCM Medium 304 lists 29.7 g/L MgSO4 x 7H2O. |
| Nitrilotriacetic acid | 10.0 G_PER_L | TOGO M299 / JCM Medium 304 lists 10.0 g/L Nitrilotriacetic acid. |
| CaCl2 x 2H2O | 3.34 G_PER_L | TOGO M299 / JCM Medium 304 lists 3.34 g/L CaCl2 x 2H2O. |
| FeSO4 x 7H2O | 99.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 99.0 mg/L FeSO4 x 7H2O. |
| Na2MoO4 x 2H2O | 13.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 13.0 mg/L Na2MoO4 x 2H2O. |
| Metals 44 | 50.0 ML_PER_L | JCM Medium 304 adds 50.0 ml/L Metals 44 from JCM Medium 149. |
| Distilled water | 950.0 ML_PER_L | TOGO M299 / JCM Medium 304 lists 950.0 ml/L Distilled water. |
JCM Medium 1059 adds 20.0 ml/L Mineral salt solution.
2.5% Glucose solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Glucose | 2.5 PERCENT_W_V | TOGO M1127 / JCM Medium 1059 lists 2.5 % w/v Glucose. |
JCM Medium 1059 adds 10.0 ml/L 2.5% Glucose solution.
Vitamin solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Biotin | 2.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 2.0 mg/L Biotin. |
| Folic acid | 2.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 2.0 mg/L Folic acid. |
| Pyridoxine HCl | 10.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 10.0 mg/L Pyridoxine HCl. |
| Riboflavin | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Riboflavin. |
| Thiamine HCl | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Thiamine HCl. |
| Nicotinamide | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Nicotinamide. |
| Calcium pantothenate | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L Calcium pantothenate. |
| Vitamin B12 | 0.1 MG_PER_L | TOGO M299 / JCM Medium 304 lists 0.1 mg/L Vitamin B12. |
| p-Aminobenzoic acid | 5.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 5.0 mg/L p-Aminobenzoic acid. |
| Distilled water | 1.0 L | TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water. |
JCM Medium 1059 adds 10.0 ml/L Vitamin solution.
Artificial seawater
Dose: 250.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaCl | 23.477 G_PER_L | TOGO M299 / JCM Medium 304 lists 23.477 g/L NaCl. |
| Na2SO4 | 3.917 G_PER_L | TOGO M299 / JCM Medium 304 lists 3.917 g/L Na2SO4. |
| MgCl2 x 6H2O | 4.981 G_PER_L | TOGO M299 / JCM Medium 304 lists 4.981 g/L MgCl2 x 6H2O. |
| CaCl2 x 2H2O | 1.102 G_PER_L | TOGO M299 / JCM Medium 304 lists 1.102 g/L CaCl2 x 2H2O. |
| NaHCO3 | 192.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 192.0 mg/L NaHCO3. |
| KCl | 664.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 664.0 mg/L KCl. |
| KBr | 6.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 6.0 mg/L KBr. |
| H3BO3 | 26.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 26.0 mg/L H3BO3. |
| SrCl2 x 6H2O | 24.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 24.0 mg/L SrCl2 x 6H2O. |
| NaF | 3.0 MG_PER_L | TOGO M299 / JCM Medium 304 lists 3.0 mg/L NaF. |
| Distilled water | 1.0 L | TOGO M299 / JCM Medium 304 lists 1.0 L Distilled water. |
JCM Medium 1059 adds 250.0 ml/L Artificial seawater.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.970762Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1127 |
| 2026-01-28T19:48:31.344741Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: KOH |
| 2026-03-09T08:04:52.215175+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 4 solution(s) from ingredients |
| 2026-03-13T06:19:50.324666Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007648 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:32.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:08.693275+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PYGV Marine Medium (B)" to "pygv_marine_medium_b" for consistent matching |
| 2026-05-16T09:03:07.742176+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:30.614951+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m1127_score15.py | RESOLVED_TOGO_M1127_SCORE15 | TOGO M1127 records JCM Medium 1059 with Bacto peptone, yeast extract, mineral salt solution from JCM Medium 304, 2.5% glucose solution, vitamin solution from JCM Medium 304, artificial seawater from JCM Medium 304, distilled water, KOH for optional pH adjustment, and 15 g/L agar for the solid formulation. JCM 1059 gently heats the base, autoclaves it, cools it to 45-50 degrees C, adds filter-sterilized glucose and vitamin solutions aseptically, and adjusts pH to 7.2-7.4 with sterile KOH if necessary. |