desulfuromonas_carbonis_medium

CultureMech:007653 bacterial COMPLEX LIQUID
Original name: Desulfuromonas Carbonis Medium

Overview

External ontology
TOGO:M1131 — Desulfuromonas Carbonis Medium
Applications
  • Microbial cultivation
Notes
Source: https://togomedium.org/medium/M1131 Original source: JCM - JCM_M1062 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1062

Composition

flowchart LR
    CultureMech_007653["desulfuromonas_carbonis_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_007653 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_NaCl["NaCl"]
    CultureMech_007653 --> ing1_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing1_NaCl -.-> CHEBI_26710
    ing2_CaCl2_2H2O["CaCl2・2H2O"]
    CultureMech_007653 --> ing2_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing2_CaCl2_2H2O -.-> CHEBI_86158
    ing3_KH2PO4["KH2PO4"]
    CultureMech_007653 --> ing3_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing3_KH2PO4 -.-> CHEBI_63036
    ing4_NH4Cl["NH4Cl"]
    CultureMech_007653 --> ing4_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing4_NH4Cl -.-> CHEBI_31206
    ing5_MgCl2_6H2O["MgCl2・6H2O"]
    CultureMech_007653 --> ing5_MgCl2_6H2O
    CHEBI_86345["CHEBI:86345"]
    ing5_MgCl2_6H2O -.-> CHEBI_86345
    ing6_KCl["KCl"]
    CultureMech_007653 --> ing6_KCl
    CHEBI_32588["CHEBI:32588"]
    ing6_KCl -.-> CHEBI_32588
    ing7_NiCl2_6H2O["NiCl2・6H2O"]
    CultureMech_007653 --> ing7_NiCl2_6H2O
    CHEBI_34887["CHEBI:34887"]
    ing7_NiCl2_6H2O -.-> CHEBI_34887
    ing8_Na2SeO3_5H2O["Na2SeO3・5H2O"]
    CultureMech_007653 --> ing8_Na2SeO3_5H2O
    CHEBI_131361["CHEBI:131361"]
    ing8_Na2SeO3_5H2O -.-> CHEBI_131361
    ing9_Na2WO4_2H2O["Na2WO4・2H2O"]
    CultureMech_007653 --> ing9_Na2WO4_2H2O
    CHEBI_63939["CHEBI:63939"]
    ing9_Na2WO4_2H2O -.-> CHEBI_63939
    ing10_Fe_NH4_2_SO4_2_6H2O["Fe(NH4)2(SO4)2・6H2O"]
    CultureMech_007653 --> ing10_Fe_NH4_2_SO4_2_6H2O
    CHEBI_76181["CHEBI:76181"]
    ing10_Fe_NH4_2_SO4_2_6H2O -.-> CHEBI_76181
    ing11_Disodium_fumarate["Disodium fumarate"]
    CultureMech_007653 --> ing11_Disodium_fumarate
    CHEBI_115156["CHEBI:115156"]
    ing11_Disodium_fumarate -.-> CHEBI_115156
    ing12_Carbon_dioxide_gas["Carbon dioxide gas"]
    CultureMech_007653 --> ing12_Carbon_dioxide_gas
    CHEBI_16526["CHEBI:16526"]
    ing12_Carbon_dioxide_gas -.-> CHEBI_16526
    ing13_Nitrogen_gas["Nitrogen gas"]
    CultureMech_007653 --> ing13_Nitrogen_gas
    CHEBI_17997["CHEBI:17997"]
    ing13_Nitrogen_gas -.-> CHEBI_17997

Ingredients (14)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
1 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component
2 NaCl
Cl.Na 58.443 g/mol
8.8 G_PER_L CHEBI:26710
sodium chloride
 Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component
3 CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
0.14 G_PER_L CHEBI:86158
calcium chloride dihydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
4 KH2PO4
H2O4P.K 136.084 g/mol
0.14 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
 Role: Buffer; Properties: Defined component, Inorganic compound, Simple component
5 NH4Cl
Cl.H4N 53.492 g/mol
0.25 G_PER_L CHEBI:31206
ammonium chloride
 Role: Nitrogen source; Properties: Inorganic compound, Simple component, Defined component
6 MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
4.6 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
 Role: Mineral source; Properties: Simple component, Inorganic compound, Defined component
7 KCl
Cl.K 74.551 g/mol
0.34 G_PER_L CHEBI:32588
potassium chloride
 Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound
8 NiCl2・6H2O
Cl2Ni 129.599 g/mol
9.3 G_PER_L CHEBI:34887
nickel dichloride
 Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component
9 Na2SeO3・5H2O
5H2O.2Na.O3Se 263.012 g/mol
0.26 G_PER_L CHEBI:131361
disodium selenite pentahydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
10 Na2WO4・2H2O
2H2O.2Na.O4W 329.846 g/mol
0.084 G_PER_L CHEBI:63939
sodium tungstate dihydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
11 Fe(NH4)2(SO4)2・6H2O
Fe.6H2O.2H4N.2O4S 392.139 g/mol
2.7 G_PER_L CHEBI:76181
ferrous ammonium sulfate hexahydrate
 Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component
12 Disodium fumarate
C4H2O4.2Na 160.036 g/mol
8 G_PER_L CHEBI:115156
disodium fumarate
 Properties: Defined component, Organic compound, Simple component
13 Carbon dioxide gas
CO2 44.009 g/mol
variable VARIABLE CHEBI:16526
carbon dioxide
 Properties: ガス
14 Nitrogen gas
N2 28.014 g/mol
variable VARIABLE CHEBI:17997
dinitrogen
 Properties: ガス

Solutions

Trace element solution (see Medium [M180])

Dose: 10 G_PER_L

Cross-reference to Medium M180

Trace vitamins (see Medium [M190])

Dose: 10 G_PER_L

Cross-reference to Medium M190

8% NaHCO3 solution (filter--sterilized)

Dose: 60 G_PER_L

Role: Buffer; Properties: Defined component, Inorganic compound, Solution

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:53.978049Z togo-import Imported from TOGO Medium Source: JCM, ID: M1131
2026-01-28T19:48:26.131543Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas
2026-03-09T08:04:43.350092+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 3 solution(s) from ingredients
2026-03-13T06:19:50.356388Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007653
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:30:20.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:08.727437+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Desulfuromonas Carbonis Medium" to "desulfuromonas_carbonis_medium" for consistent matching
2026-05-16T09:03:07.778744+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:30.654753+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 6 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:46.985416+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.