Overview
- External ontology
- TOGO:M113 — Benzoate Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M113 Original source: JCM - JCM_M121 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=121
Composition
flowchart LR
CultureMech_007662["benzoate_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_007662 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_007662 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_Yeast_extract["Yeast extract"]
CultureMech_007662 --> ing2_Yeast_extract
ing3_NaCl["NaCl"]
CultureMech_007662 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_KH2PO4["KH2PO4"]
CultureMech_007662 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5__NH4_2HPO4["(NH4)2HPO4"]
CultureMech_007662 --> ing5__NH4_2HPO4
CHEBI_63051["CHEBI:63051"]
ing5__NH4_2HPO4 -.-> CHEBI_63051
ing6_Agar__Noble__BD_Difco_["Agar, Noble (BD-Difco)"]
CultureMech_007662 --> ing6_Agar__Noble__BD_Difco_
ing7_Sodium_benzoate["Sodium benzoate"]
CultureMech_007662 --> ing7_Sodium_benzoate
CHEBI_113455["CHEBI:113455"]
ing7_Sodium_benzoate -.-> CHEBI_113455
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Simple component, Defined component |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 3 | Yeast extract | 0.5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
5 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component |
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
1.2 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Defined component, Simple component, Inorganic compound |
| 6 |
(NH4)2HPO4
2H4N.HO4P 132.056 g/mol
|
3 G_PER_L |
CHEBI:63051
diammonium hydrogen phosphate
|
Role: Nitrogen source; Properties: Inorganic compound, Simple component, Defined component |
| 7 | Agar, Noble (BD-Difco) | 20 G_PER_L | Role: Solidifying component; Properties: Defined component | |
| 8 |
Sodium benzoate
C7H5O2.Na 144.105 g/mol
|
3 G_PER_L |
CHEBI:113455
sodium benzoate
|
Properties: Defined component, Organic compound, Simple component |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.974874Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M113 |
| 2026-01-28T19:48:19.998319Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:19:50.422802Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007662 |
| 2026-03-17T06:30:08.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:08.795210+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Benzoate Medium" to "benzoate_medium" for consistent matching |
| 2026-06-05T07:40:30.713812+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:21.437507+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:37:34.431484+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:47.007533+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |