desulfurella_tr1_medium

CultureMech:007676 bacterial COMPLEX LIQUID
Original name: Desulfurella TR1 Medium

Overview

External ontology
TOGO:M1152 — Desulfurella TR1 Medium
Applications
  • Microbial cultivation
Notes
Source: https://togomedium.org/medium/M1152 Original source: JCM - JCM_M1083 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1083

Composition

flowchart LR
    CultureMech_007676["desulfurella_tr1_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_007676 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_Yeast_extract["Yeast extract"]
    CultureMech_007676 --> ing1_Yeast_extract
    ing2_NaCl["NaCl"]
    CultureMech_007676 --> ing2_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing2_NaCl -.-> CHEBI_26710
    ing3_CaCl2_2H2O["CaCl2・2H2O"]
    CultureMech_007676 --> ing3_CaCl2_2H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_2H2O -.-> CHEBI_86158
    ing4_KH2PO4["KH2PO4"]
    CultureMech_007676 --> ing4_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing4_KH2PO4 -.-> CHEBI_63036
    ing5_NH4Cl["NH4Cl"]
    CultureMech_007676 --> ing5_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing5_NH4Cl -.-> CHEBI_31206
    ing6_MgCl2_6H2O["MgCl2・6H2O"]
    CultureMech_007676 --> ing6_MgCl2_6H2O
    CHEBI_86345["CHEBI:86345"]
    ing6_MgCl2_6H2O -.-> CHEBI_86345
    ing7_Sulfur__powder_["Sulfur (powder)"]
    CultureMech_007676 --> ing7_Sulfur__powder_
    CHEBI_33403["CHEBI:33403"]
    ing7_Sulfur__powder_ -.-> CHEBI_33403
    ing8_Na2HPO4_2H2O["Na2HPO4・2H2O"]
    CultureMech_007676 --> ing8_Na2HPO4_2H2O
    CHEBI_34683["CHEBI:34683"]
    ing8_Na2HPO4_2H2O -.-> CHEBI_34683
    ing9_Sodium_acetate_3H2O["Sodium acetate・3H2O"]
    CultureMech_007676 --> ing9_Sodium_acetate_3H2O
    CHEBI_32954["CHEBI:32954"]
    ing9_Sodium_acetate_3H2O -.-> CHEBI_32954
    ing10_Resazurin["Resazurin"]
    CultureMech_007676 --> ing10_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing10_Resazurin -.-> CHEBI_8806
    ing11_Carbon_dioxide_gas["Carbon dioxide gas"]
    CultureMech_007676 --> ing11_Carbon_dioxide_gas
    CHEBI_16526["CHEBI:16526"]
    ing11_Carbon_dioxide_gas -.-> CHEBI_16526
    ing12_Nitrogen_gas["Nitrogen gas"]
    CultureMech_007676 --> ing12_Nitrogen_gas
    CHEBI_17997["CHEBI:17997"]
    ing12_Nitrogen_gas -.-> CHEBI_17997

Ingredients (13)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
1 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component
2 Yeast extract 0.1 G_PER_L Role: Nutrient source; Properties: Undefined component
3 NaCl
Cl.Na 58.443 g/mol
0.3 G_PER_L CHEBI:26710
sodium chloride
 Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound
4 CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
0.11 G_PER_L CHEBI:86158
calcium chloride dihydrate
 Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound
5 KH2PO4
H2O4P.K 136.084 g/mol
0.41 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
 Role: Buffer; Properties: Inorganic compound, Simple component, Defined component
6 NH4Cl
Cl.H4N 53.492 g/mol
0.3 G_PER_L CHEBI:31206
ammonium chloride
 Role: Nitrogen source; Properties: Inorganic compound, Defined component, Simple component
7 MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
0.1 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
 Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component
8 Sulfur (powder) 0.8 G_PER_L CHEBI:33403
elemental sulfur
 Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component
9 Na2HPO4・2H2O
HO4P.2Na 141.958 g/mol
0.53 G_PER_L CHEBI:34683
disodium hydrogenphosphate
 Role: Buffer; Properties: Simple component, Inorganic compound, Defined component
10 Sodium acetate・3H2O
C2H3O2.Na 82.034 g/mol
0.68 G_PER_L CHEBI:32954
sodium acetate
 Role: Buffer; Properties: Organic compound, Simple component, Defined component
11 Resazurin
C12H7NO4 229.191 g/mol
variable VARIABLE CHEBI:8806
Resazurin
 Role: pH dependent redox indicator; Properties: Defined component, Organic compound, Simple component
12 Carbon dioxide gas
CO2 44.009 g/mol
variable VARIABLE CHEBI:16526
carbon dioxide
 Properties: ガス
13 Nitrogen gas
N2 28.014 g/mol
variable VARIABLE CHEBI:17997
dinitrogen
 Properties: ガス

Solutions

Acid trace element solution (see Medium [M609])

Dose: 1 G_PER_L

Cross-reference to Medium M609

Alkaline trace element solution (see Medium [M609])

Dose: 1 G_PER_L

Cross-reference to Medium M609

8% NaHCO3 solution

Dose: 12.5 G_PER_L

Role: Buffer; Properties: Defined component, Inorganic compound, Solution

Vitamin solution (see Medium [M609])

Dose: 0.2 G_PER_L

Cross-reference to Medium M609

5% Na2S・9H2O solution

Dose: 6 G_PER_L

Role: Reducing agent; Properties: Defined component, Solution, Inorganic compound

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-06-14T05:58:58.561437+00:00 idnf-grounding-fix-v1.0 Fixed ID_NOT_FOUND term groundings Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable).
2026-01-27T06:35:54.019490Z togo-import Imported from TOGO Medium Source: JCM, ID: M1152
2026-01-28T19:48:24.992821Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: Resazurin; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas
2026-03-09T08:04:41.323502+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 5 solution(s) from ingredients
2026-03-13T03:09:11.342080Z data-quality-cleanup-v1.0 Data quality fixes Merged 2 duplicate ingredient(s)
2026-03-13T06:19:50.537615Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:007676
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:30:18.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:08.920347+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Desulfurella TR1 Medium" to "desulfurella_tr1_medium" for consistent matching
2026-05-16T09:03:07.961873+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:30.832913+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:47.051297+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.