Overview
- External ontology
- TOGO:M1259 — Caenicola Mobile Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M1259 Original source: JCM - JCM_M1175 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=1175
Composition
flowchart LR
CultureMech_007790["caenicola_mobile_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_007790 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract["Yeast extract"]
CultureMech_007790 --> ing1_Yeast_extract
ing2_NaCl["NaCl"]
CultureMech_007790 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_007790 --> ing3_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_2H2O -.-> CHEBI_86158
ing4_KH2PO4["KH2PO4"]
CultureMech_007790 --> ing4_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing4_KH2PO4 -.-> CHEBI_63036
ing5_NH4Cl["NH4Cl"]
CultureMech_007790 --> ing5_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing5_NH4Cl -.-> CHEBI_31206
ing6_K2HPO4["K2HPO4"]
CultureMech_007790 --> ing6_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing6_K2HPO4 -.-> CHEBI_131527
ing7_Resazurin["Resazurin"]
CultureMech_007790 --> ing7_Resazurin
CHEBI_8806["CHEBI:8806"]
ing7_Resazurin -.-> CHEBI_8806
ing8_MgCl2_6H2O["MgCl2・6H2O"]
CultureMech_007790 --> ing8_MgCl2_6H2O
CHEBI_86345["CHEBI:86345"]
ing8_MgCl2_6H2O -.-> CHEBI_86345
ing9_KCl["KCl"]
CultureMech_007790 --> ing9_KCl
CHEBI_32588["CHEBI:32588"]
ing9_KCl -.-> CHEBI_32588
ing10_L_Cysteine["L-Cysteine"]
CultureMech_007790 --> ing10_L_Cysteine
CHEBI_17561["CHEBI:17561"]
ing10_L_Cysteine -.-> CHEBI_17561
ing11_L_Arginine["L-Arginine"]
CultureMech_007790 --> ing11_L_Arginine
CHEBI_16467["CHEBI:16467"]
ing11_L_Arginine -.-> CHEBI_16467
ing12_L_Histidine["L-Histidine"]
CultureMech_007790 --> ing12_L_Histidine
CHEBI_15971["CHEBI:15971"]
ing12_L_Histidine -.-> CHEBI_15971
ing13_Tryptone__BD_Difco_["Tryptone (BD-Difco)"]
CultureMech_007790 --> ing13_Tryptone__BD_Difco_
ing14_Casamino_acids__BD_Difco_["Casamino acids (BD-Difco)"]
CultureMech_007790 --> ing14_Casamino_acids__BD_Difco_
ing15_KOH["KOH"]
CultureMech_007790 --> ing15_KOH
CHEBI_32035["CHEBI:32035"]
ing15_KOH -.-> CHEBI_32035
ing16_Carbon_dioxide_gas["Carbon dioxide gas"]
CultureMech_007790 --> ing16_Carbon_dioxide_gas
CHEBI_16526["CHEBI:16526"]
ing16_Carbon_dioxide_gas -.-> CHEBI_16526
ing17_Nitrogen_gas["Nitrogen gas"]
CultureMech_007790 --> ing17_Nitrogen_gas
CHEBI_17997["CHEBI:17997"]
ing17_Nitrogen_gas -.-> CHEBI_17997
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
975 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Simple component, Defined component |
| 2 | Yeast extract | 2 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
0.4 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 4 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.05 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 5 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.5 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 6 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.5 G_PER_L |
CHEBI:31206
ammonium chloride
|
Role: Nitrogen source; Properties: Defined component, Inorganic compound, Simple component |
| 7 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
Role: Buffer; Properties: Simple component, Inorganic compound, Defined component |
| 8 |
Resazurin
C12H7NO4 229.191 g/mol
|
1 G_PER_L |
CHEBI:8806
Resazurin
|
Role: pH dependent redox indicator; Properties: Organic compound, Simple component, Defined component |
| 9 |
MgCl2・6H2O
2Cl.6H2O.Mg 203.301 g/mol
|
0.3 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 10 |
KCl
Cl.K 74.551 g/mol
|
0.4 G_PER_L |
CHEBI:32588
potassium chloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 11 |
L-Cysteine
C3H7NO2S 121.161 g/mol
|
2.4 G_PER_L |
CHEBI:17561
L-cysteine
|
Role: Nitrogen source; Properties: Defined component, Simple component, Organic compound |
| 12 |
L-Arginine
C6H14N4O2 174.204 g/mol
|
4.2 G_PER_L |
CHEBI:16467
L-arginine
|
Role: Nitrogen source; Properties: Simple component, Organic compound, Defined component |
| 13 |
L-Histidine
C6H9N3O2 155.157 g/mol
|
4.2 G_PER_L |
CHEBI:15971
L-histidine
|
Role: Nitrogen source; Properties: Defined component, Organic compound, Simple component |
| 14 | Tryptone (BD-Difco) | 2 G_PER_L | Properties: Undefined component | |
| 15 | Casamino acids (BD-Difco) | 2 G_PER_L | Properties: Undefined component | |
| 16 |
KOH
HO.K 56.105 g/mol
|
variable VARIABLE |
CHEBI:32035
potassium hydroxide
|
Role: Mineral source; Properties: Defined component, Solution |
| 17 |
Carbon dioxide gas
CO2 44.009 g/mol
|
variable VARIABLE |
CHEBI:16526
carbon dioxide
|
Properties: ガス |
| 18 |
Nitrogen gas
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: ガス |
Solutions
Trace metal solution (see Medium [M288])
Dose: 1 G_PER_L
Cross-reference to Medium M288
8% NaHCO3 solution
Dose: 25 G_PER_L
Role: Buffer; Properties: Defined component, Inorganic compound, Solution
Trace vitamins (see Medium [M190])
Dose: 1 G_PER_L
Cross-reference to Medium M190
5% Na2S・9H2O solution
Dose: 8 G_PER_L
Role: Reducing agent; Properties: Defined component, Solution, Inorganic compound
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.237082Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M1259 |
| 2026-01-28T19:48:37.444875Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: KOH; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas |
| 2026-03-09T08:05:02.441823+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 4 solution(s) from ingredients |
| 2026-03-13T03:09:34.326441Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 2 duplicate ingredient(s) |
| 2026-03-13T06:19:51.489424Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:007790 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:45.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:09.915302+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Caenicola Mobile Medium" to "caenicola_mobile_medium" for consistent matching |
| 2026-05-16T09:03:08.910634+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:31.825002+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 11 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:47.416189+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |