Overview
- External ontology
- TOGO:M2106 — d-GPY
- Applications
-
- Microbial cultivation
- Notes
- TOGO M2106 imports NBRC Medium 1429 as d-GPY. NBRC 1429 lists 1 g Polypeptone, 0.5 g yeast extract, 2 g glucose, 1 L seawater at 1.75% salinity, and 15 g agar.
Composition
flowchart LR
CultureMech_008698["d_gpy"]
ing0_Polypeptone["Polypeptone"]
CultureMech_008698 --> ing0_Polypeptone
ing1_Yeast_extract["Yeast extract"]
CultureMech_008698 --> ing1_Yeast_extract
ing2_Glucose["Glucose"]
CultureMech_008698 --> ing2_Glucose
CHEBI_17234["CHEBI:17234"]
ing2_Glucose -.-> CHEBI_17234
ing3_Seawater__1_75___salinity_["Seawater (1.75 % salinity)"]
CultureMech_008698 --> ing3_Seawater__1_75___salinity_
ing4_Agar["Agar"]
CultureMech_008698 --> ing4_Agar
CHEBI_2509["CHEBI:2509"]
ing4_Agar -.-> CHEBI_2509
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Polypeptone | 1.0 G_PER_L | NBRC Medium 1429 lists 1 g/L Polypeptone; this peptone product is retained as an opaque complex component. | |
| 2 | Yeast extract | 0.5 G_PER_L |
FOODON:03315426
yeast extract
|
NBRC Medium 1429 lists 0.5 g/L yeast extract. |
| 3 |
Glucose
C6H12O6 180.156 g/mol
|
2.0 G_PER_L |
CHEBI:17234
glucose
|
NBRC Medium 1429 lists 2 g/L glucose. |
| 4 | Seawater (1.75 % salinity) | 1.0 L | NBRC Medium 1429 lists 1 L Seawater at 1.75% salinity without disclosing the seawater composition. | |
| 5 | Agar | 15.0 G_PER_L |
CHEBI:2509
agar
|
NBRC Medium 1429 lists 15 g/L agar. |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:59.068002Z | togo-import | Imported from TOGO Medium | Source: NBRC, ID: M2106 |
| 2026-01-28T19:48:32.895309Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:19:59.500892Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:008698 |
| 2026-03-17T06:30:35.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:18.140569+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "d-GPY" to "d_gpy" for consistent matching |
| 2026-06-05T07:40:55.285131+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m2106_d_gpy_score15.py | RESOLVED_TOGO_M2106_D_GPY_SCORE15 | TOGO M2106 imports NBRC Medium 1429 as d-GPY. NBRC 1429 lists 1 g Polypeptone, 0.5 g yeast extract, 2 g glucose, 1 L seawater at 1.75% salinity, and 15 g agar. Corrected the imported seawater g/L artifact and marked the NBRC formula as curated. |