Overview
- External ontology
- TOGO:M2813 — Basal medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M2813
Composition
flowchart LR
CultureMech_009361["basal_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009361 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract["Yeast extract"]
CultureMech_009361 --> ing1_Yeast_extract
ing2_NaCl["NaCl"]
CultureMech_009361 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_Hemin["Hemin"]
CultureMech_009361 --> ing3_Hemin
CHEBI_50385["CHEBI:50385"]
ing3_Hemin -.-> CHEBI_50385
ing4_Glucose["Glucose"]
CultureMech_009361 --> ing4_Glucose
CHEBI_17234["CHEBI:17234"]
ing4_Glucose -.-> CHEBI_17234
ing5_Vitamin_K1["Vitamin K1"]
CultureMech_009361 --> ing5_Vitamin_K1
CHEBI_18067["CHEBI:18067"]
ing5_Vitamin_K1 -.-> CHEBI_18067
ing6_Proteose_peptone["Proteose peptone"]
CultureMech_009361 --> ing6_Proteose_peptone
ing7_10_N_NaOH["10 N NaOH"]
CultureMech_009361 --> ing7_10_N_NaOH
ing8_N2["N2"]
CultureMech_009361 --> ing8_N2
CHEBI_17997["CHEBI:17997"]
ing8_N2 -.-> CHEBI_17997
Ingredients (9)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 | Yeast extract | 5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
5 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Simple component, Defined component, Inorganic compound |
| 4 |
Hemin
C34H32ClFeN4O4 651.952 g/mol
|
5 G_PER_L |
CHEBI:50385
hemin
|
Role: Growth factor; Properties: Defined component, Simple component, Organic compound |
| 5 |
Glucose
C6H12O6 180.156 g/mol
|
60 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Organic compound, Simple component, Defined component |
| 6 |
Vitamin K1
C31H46O2 450.707 g/mol
|
0.5 G_PER_L |
CHEBI:18067
phylloquinone
|
Role: Vitamin; Properties: Organic compound, Simple component, Defined component |
| 7 | Proteose peptone | 20 G_PER_L | Properties: Undefined component | |
| 8 | 10 N NaOH | variable VARIABLE | Properties: Defined component, Inorganic compound, Solution | |
| 9 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: Gas |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:57.327641Z | togo-import | Imported from TOGO Medium | Source: TOGO, ID: M2813 |
| 2026-01-28T19:48:14.429718Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: 10 N NaOH; Added default concentration for ingredient: N2 |
| 2026-03-13T06:20:05.873236Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009361 |
| 2026-03-17T06:29:56.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:24.799362+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Basal medium" to "basal_medium" for consistent matching |
| 2026-05-16T09:03:16.109652+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:39.377226+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |