Overview
- External ontology
- TOGO:M3010 — PYG Medium (K)
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.0, 'max': 7.2}
- Notes
- TOGO M3010 imports JCM Medium 1338 PYG Medium (K). JCM Medium 1338 lists 5 g trypticase peptone, 5 g peptone, 10 g yeast extract, 2 g KH2PO4, 0.5 g L-Cysteine HCl H2O, 1 mg resazurin, 40 ml salt solution from JCM Medium 676, and 940 ml distilled water, then instructs anaerobic addition of 10 ml hemin solution and 10 ml menadione solution from JCM Medium 469 after autoclaving under N2.
Composition
flowchart LR
CultureMech_009528["pyg_medium_k"]
ing0_Trypticase_peptone["Trypticase peptone"]
CultureMech_009528 --> ing0_Trypticase_peptone
ing1_Peptone["Peptone"]
CultureMech_009528 --> ing1_Peptone
ing2_Yeast_extract["Yeast extract"]
CultureMech_009528 --> ing2_Yeast_extract
ing3_KH2PO4["KH2PO4"]
CultureMech_009528 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4_L_Cysteine_x_HCl_x_H2O["L-Cysteine x HCl x H2O"]
CultureMech_009528 --> ing4_L_Cysteine_x_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing4_L_Cysteine_x_HCl_x_H2O -.-> CHEBI_91248
ing5_Resazurin["Resazurin"]
CultureMech_009528 --> ing5_Resazurin
CHEBI_8806["CHEBI:8806"]
ing5_Resazurin -.-> CHEBI_8806
ing6_Distilled_water["Distilled water"]
CultureMech_009528 --> ing6_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing6_Distilled_water -.-> CHEBI_15377
ing7_Nitrogen_gas["Nitrogen gas"]
CultureMech_009528 --> ing7_Nitrogen_gas
CHEBI_17997["CHEBI:17997"]
ing7_Nitrogen_gas -.-> CHEBI_17997
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Trypticase peptone | 5.0 G_PER_L |
MICRO:0000175 (source link unavailable)
Trypticase peptone
|
TOGO M3010 / JCM Medium 1338 lists 5.0 g/L Trypticase peptone. |
| 2 | Peptone | 5.0 G_PER_L |
MICRO:0000178 (source link unavailable)
Peptone
|
TOGO M3010 / JCM Medium 1338 lists 5.0 g/L Peptone. |
| 3 | Yeast extract | 10.0 G_PER_L |
FOODON:03315426
Yeast extract
|
TOGO M3010 / JCM Medium 1338 lists 10.0 g/L Yeast extract. |
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
2.0 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
TOGO M3010 / JCM Medium 1338 lists 2.0 g/L KH2PO4. |
| 5 |
L-Cysteine x HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.5 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
TOGO M3010 / JCM Medium 1338 lists 0.5 g/L L-Cysteine x HCl x H2O. |
| 6 |
Resazurin
C12H7NO4 229.191 g/mol
|
1.0 MG_PER_L |
CHEBI:8806
Resazurin
|
TOGO M3010 / JCM Medium 1338 lists 1.0 mg/L Resazurin. |
| 7 |
Distilled water
H2O 18.015 g/mol
|
940.0 ML_PER_L |
CHEBI:15377
water
|
TOGO M3010 / JCM Medium 1338 lists 940.0 ml/L Distilled water. |
| 8 |
Nitrogen gas
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
JCM Medium 1338 instructs autoclaving the basal medium under N2. |
Preparation
- Mix the basal PYG Medium (K) components thoroughly.
- Autoclave the basal medium under a nitrogen atmosphere.
- Cool the autoclaved basal medium.
- Aseptically and anaerobically add autoclaved hemin solution and menadione solution.
- Adjust pH to 7.0-7.2, if necessary.
Solutions
Salt solution
Dose: 40.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| CaCl2 x 2H2O | 0.25 G_PER_L | TOGO M695 / JCM Medium 676 lists 0.25 g/L CaCl2 x 2H2O. |
| MgSO4 x 7H2O | 0.5 G_PER_L | TOGO M695 / JCM Medium 676 lists 0.5 g/L MgSO4 x 7H2O. |
| K2HPO4 | 1.0 G_PER_L | TOGO M695 / JCM Medium 676 lists 1.0 g/L K2HPO4. |
| KH2PO4 | 1.0 G_PER_L | TOGO M695 / JCM Medium 676 lists 1.0 g/L KH2PO4. |
| NaHCO3 | 10.0 G_PER_L | TOGO M695 / JCM Medium 676 lists 10.0 g/L NaHCO3. |
| NaCl | 2.0 G_PER_L | TOGO M695 / JCM Medium 676 lists 2.0 g/L NaCl. |
| Distilled water | 1.0 L | TOGO M695 / JCM Medium 676 lists 1.0 L Distilled water. |
JCM Medium 1338 adds 40.0 ml/L salt solution from JCM Medium 676.
Hemin solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Hemin | 0.5 G_PER_L | JCM Medium 469 dissolves 50 mg hemin in 1 ml of 1 N NaOH and adjusts to 100 ml. |
| 1 N NaOH | 10.0 ML_PER_L | JCM Medium 469 dissolves hemin in 1 ml of 1 N NaOH before adjusting the hemin solution to 100 ml. |
JCM Medium 1338 adds 10.0 ml/L hemin solution from JCM Medium 469.
Menadione solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Menadione | 0.05 G_PER_L | JCM Medium 469 dissolves 5 mg menadione in 1 ml ethanol and adjusts to 100 ml. |
| Ethanol | 10.0 ML_PER_L | JCM Medium 469 dissolves menadione in 1 ml ethanol before adjusting the menadione solution to 100 ml. |
JCM Medium 1338 adds 10.0 ml/L menadione solution from JCM Medium 469.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:53.680630Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M3010 |
| 2026-01-28T19:48:11.892399Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2 |
| 2026-03-09T08:04:19.627510+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 3 solution(s) from ingredients |
| 2026-03-13T06:20:06.611917Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009528 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:29:50.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:25.626534+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "PYG Medium (K)" to "pyg_medium_k" for consistent matching |
| 2026-05-16T09:04:29.834529+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:41:43.098368+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:47:10.601051+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-12T00:00:00-07:00 | repair_togo_m3010_pyg_medium_k_score15.py | RESOLVED_TOGO_M3010_PYG_MEDIUM_K_SCORE15 | Corrected TOGO M3010 ml and mg imports, added pH 7.0-7.2, expanded the salt, hemin, and menadione stocks from JCM cross-references, and grounded all disclosed PYG Medium (K) ingredients and stock components. |