pyg_medium_k

CultureMech:009528 bacterial COMPLEX LIQUID
Original name: PYG Medium (K)

Overview

External ontology
TOGO:M3010 — PYG Medium (K)
Applications
  • Microbial cultivation
pH range
{'min': 7.0, 'max': 7.2}
Notes
TOGO M3010 imports JCM Medium 1338 PYG Medium (K). JCM Medium 1338 lists 5 g trypticase peptone, 5 g peptone, 10 g yeast extract, 2 g KH2PO4, 0.5 g L-Cysteine HCl H2O, 1 mg resazurin, 40 ml salt solution from JCM Medium 676, and 940 ml distilled water, then instructs anaerobic addition of 10 ml hemin solution and 10 ml menadione solution from JCM Medium 469 after autoclaving under N2.

Composition

flowchart LR
    CultureMech_009528["pyg_medium_k"]
    ing0_Trypticase_peptone["Trypticase peptone"]
    CultureMech_009528 --> ing0_Trypticase_peptone
    ing1_Peptone["Peptone"]
    CultureMech_009528 --> ing1_Peptone
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_009528 --> ing2_Yeast_extract
    ing3_KH2PO4["KH2PO4"]
    CultureMech_009528 --> ing3_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing3_KH2PO4 -.-> CHEBI_63036
    ing4_L_Cysteine_x_HCl_x_H2O["L-Cysteine x HCl x H2O"]
    CultureMech_009528 --> ing4_L_Cysteine_x_HCl_x_H2O
    CHEBI_91248["CHEBI:91248"]
    ing4_L_Cysteine_x_HCl_x_H2O -.-> CHEBI_91248
    ing5_Resazurin["Resazurin"]
    CultureMech_009528 --> ing5_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing5_Resazurin -.-> CHEBI_8806
    ing6_Distilled_water["Distilled water"]
    CultureMech_009528 --> ing6_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing6_Distilled_water -.-> CHEBI_15377
    ing7_Nitrogen_gas["Nitrogen gas"]
    CultureMech_009528 --> ing7_Nitrogen_gas
    CHEBI_17997["CHEBI:17997"]
    ing7_Nitrogen_gas -.-> CHEBI_17997

Ingredients (8)

# Ingredient Concentration Ontology Notes
1 Trypticase peptone 5.0 G_PER_L MICRO:0000175 (source link unavailable)
Trypticase peptone
TOGO M3010 / JCM Medium 1338 lists 5.0 g/L Trypticase peptone.
2 Peptone 5.0 G_PER_L MICRO:0000178 (source link unavailable)
Peptone
TOGO M3010 / JCM Medium 1338 lists 5.0 g/L Peptone.
3 Yeast extract 10.0 G_PER_L FOODON:03315426
Yeast extract
TOGO M3010 / JCM Medium 1338 lists 10.0 g/L Yeast extract.
4 KH2PO4
H2O4P.K 136.084 g/mol
2.0 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
TOGO M3010 / JCM Medium 1338 lists 2.0 g/L KH2PO4.
5 L-Cysteine x HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
0.5 G_PER_L CHEBI:91248
L-cysteine hydrochloride hydrate
TOGO M3010 / JCM Medium 1338 lists 0.5 g/L L-Cysteine x HCl x H2O.
6 Resazurin
C12H7NO4 229.191 g/mol
1.0 MG_PER_L CHEBI:8806
Resazurin
TOGO M3010 / JCM Medium 1338 lists 1.0 mg/L Resazurin.
7 Distilled water
H2O 18.015 g/mol
940.0 ML_PER_L CHEBI:15377
water
TOGO M3010 / JCM Medium 1338 lists 940.0 ml/L Distilled water.
8 Nitrogen gas
N2 28.014 g/mol
variable VARIABLE CHEBI:17997
dinitrogen
JCM Medium 1338 instructs autoclaving the basal medium under N2.

Preparation

  1. Mix the basal PYG Medium (K) components thoroughly.
  2. Autoclave the basal medium under a nitrogen atmosphere.
  3. Cool the autoclaved basal medium.
  4. Aseptically and anaerobically add autoclaved hemin solution and menadione solution.
  5. Adjust pH to 7.0-7.2, if necessary.

Solutions

Salt solution

Dose: 40.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
CaCl2 x 2H2O 0.25 G_PER_L TOGO M695 / JCM Medium 676 lists 0.25 g/L CaCl2 x 2H2O.
MgSO4 x 7H2O 0.5 G_PER_L TOGO M695 / JCM Medium 676 lists 0.5 g/L MgSO4 x 7H2O.
K2HPO4 1.0 G_PER_L TOGO M695 / JCM Medium 676 lists 1.0 g/L K2HPO4.
KH2PO4 1.0 G_PER_L TOGO M695 / JCM Medium 676 lists 1.0 g/L KH2PO4.
NaHCO3 10.0 G_PER_L TOGO M695 / JCM Medium 676 lists 10.0 g/L NaHCO3.
NaCl 2.0 G_PER_L TOGO M695 / JCM Medium 676 lists 2.0 g/L NaCl.
Distilled water 1.0 L TOGO M695 / JCM Medium 676 lists 1.0 L Distilled water.
JCM Medium 1338 adds 40.0 ml/L salt solution from JCM Medium 676.

Hemin solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Hemin 0.5 G_PER_L JCM Medium 469 dissolves 50 mg hemin in 1 ml of 1 N NaOH and adjusts to 100 ml.
1 N NaOH 10.0 ML_PER_L JCM Medium 469 dissolves hemin in 1 ml of 1 N NaOH before adjusting the hemin solution to 100 ml.
JCM Medium 1338 adds 10.0 ml/L hemin solution from JCM Medium 469.

Menadione solution

Dose: 10.0 ML_PER_L

Stock composition
IngredientConcentrationNotes
Menadione 0.05 G_PER_L JCM Medium 469 dissolves 5 mg menadione in 1 ml ethanol and adjusts to 100 ml.
Ethanol 10.0 ML_PER_L JCM Medium 469 dissolves menadione in 1 ml ethanol before adjusting the menadione solution to 100 ml.
JCM Medium 1338 adds 10.0 ml/L menadione solution from JCM Medium 469.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:53.680630Z togo-import Imported from TOGO Medium Source: JCM, ID: M3010
2026-01-28T19:48:11.892399Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: N2
2026-03-09T08:04:19.627510+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 3 solution(s) from ingredients
2026-03-13T06:20:06.611917Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:009528
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:29:50.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:25.626534+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "PYG Medium (K)" to "pyg_medium_k" for consistent matching
2026-05-16T09:04:29.834529+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:41:43.098368+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:10.601051+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-12T00:00:00-07:00 repair_togo_m3010_pyg_medium_k_score15.py RESOLVED_TOGO_M3010_PYG_MEDIUM_K_SCORE15 Corrected TOGO M3010 ml and mg imports, added pH 7.0-7.2, expanded the salt, hemin, and menadione stocks from JCM cross-references, and grounded all disclosed PYG Medium (K) ingredients and stock components.