Overview
- External ontology
- TOGO:M3055 — oligotrophic YPG
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M3055 Original source: NBRC - NBRC_M1611 Original URL: https://www.nite.go.jp/nbrc/catalogue/NBRCMediumDetailServlet?NO=1611
Composition
flowchart LR
CultureMech_009569["oligotrophic_ypg"]
ing0_Distilled_water["Distilled water"]
CultureMech_009569 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_D____Glucose["D(+)-Glucose"]
CultureMech_009569 --> ing1_D____Glucose
CHEBI_17634["CHEBI:17634"]
ing1_D____Glucose -.-> CHEBI_17634
ing2_Agar["Agar"]
CultureMech_009569 --> ing2_Agar
CHEBI_2509["CHEBI:2509"]
ing2_Agar -.-> CHEBI_2509
ing3_Yeast_Extract_Difco_["Yeast Extract(Difco)"]
CultureMech_009569 --> ing3_Yeast_Extract_Difco_
ing4_Peptone_Difco_["Peptone(Difco)"]
CultureMech_009569 --> ing4_Peptone_Difco_
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 |
D(+)-Glucose
C6H12O6 180.156 g/mol
|
0.75 G_PER_L |
CHEBI:17634
D-glucose
|
Role: Carbon source; Properties: Defined component, Simple component, Organic compound |
| 3 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
Role: Solidifying component |
| 4 | Yeast Extract(Difco) | 0.75 G_PER_L | Properties: Undefined component | |
| 5 | Peptone(Difco) | 1.5 G_PER_L | Properties: Undefined component |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:59.247030Z | togo-import | Imported from TOGO Medium | Source: NBRC, ID: M3055 |
| 2026-01-28T19:48:32.485423Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-13T06:20:06.971289Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009569 |
| 2026-03-17T06:30:34.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:25.995015+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "oligotrophic YPG" to "oligotrophic_ypg" for consistent matching |
| 2026-06-05T07:41:40.449101+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |