Overview
- External ontology
- TOGO:M333 — Pyrobaculum Calidifontis Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M333 Original source: JCM - JCM_M338 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=338
Composition
flowchart LR
CultureMech_009711["pyrobaculum_calidifontis_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009711 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_009711 --> ing1_Yeast_extract__BD_Difco_
ing2_Na2S2O3_5H2O["Na2S2O3・5H2O"]
CultureMech_009711 --> ing2_Na2S2O3_5H2O
CHEBI_32150["CHEBI:32150"]
ing2_Na2S2O3_5H2O -.-> CHEBI_32150
ing3_Tryptone__BD_Difco_["Tryptone (BD-Difco)"]
CultureMech_009711 --> ing3_Tryptone__BD_Difco_
ing4_NaOH["NaOH"]
CultureMech_009711 --> ing4_NaOH
CHEBI_32145["CHEBI:32145"]
ing4_NaOH -.-> CHEBI_32145
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 | Yeast extract (BD-Difco) | 1 G_PER_L | Properties: Undefined component | |
| 3 |
Na2S2O3・5H2O
5H2O.2Na.O3S2 248.186 g/mol
|
3 G_PER_L |
CHEBI:32150
sodium thiosulfate pentahydrate
|
Properties: Inorganic compound, Simple component, Defined component |
| 4 | Tryptone (BD-Difco) | 10 G_PER_L | Properties: Undefined component | |
| 5 |
NaOH
HO.Na 39.997 g/mol
|
variable VARIABLE |
CHEBI:32145
sodium hydroxide
|
Properties: Defined component, Inorganic compound, Solution |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.865955Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M333 |
| 2026-01-28T19:48:28.025152Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: NaOH |
| 2026-03-13T06:20:08.302888Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009711 |
| 2026-03-17T06:30:24.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:27.293801+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Pyrobaculum Calidifontis Medium" to "pyrobaculum_calidifontis_medium" for consistent matching |
| 2026-05-16T09:03:17.200187+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:40.495705+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |