desulfovibrio_medium

CultureMech:009765 bacterial COMPLEX LIQUID
Original name: Desulfovibrio Medium

Overview

External ontology
TOGO:M384 — Desulfovibrio Medium
Applications
  • Microbial cultivation
pH range
{'min': 6.8, 'max': 7.0, 'notes': 'JCM Medium 389 says adjust pH to 6.8-7.0, if necessary.'}
Notes
TOGO M384 mirrors JCM Medium 389: Desulfovibrio Medium uses sulfate, sodium lactate, yeast extract, reducing agents, resazurin, and anoxic N2 handling.

Composition

flowchart LR
    CultureMech_009765["desulfovibrio_medium"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_009765 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_NH4Cl["NH4Cl"]
    CultureMech_009765 --> ing1_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing1_NH4Cl -.-> CHEBI_31206
    ing2_Na2SO4["Na2SO4"]
    CultureMech_009765 --> ing2_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing2_Na2SO4 -.-> CHEBI_32149
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_009765 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_009765 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_Sodium_lactate["Sodium lactate"]
    CultureMech_009765 --> ing5_Sodium_lactate
    CHEBI_75228["CHEBI:75228"]
    ing5_Sodium_lactate -.-> CHEBI_75228
    ing6_Yeast_extract["Yeast extract"]
    CultureMech_009765 --> ing6_Yeast_extract
    ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_009765 --> ing7_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing8_Sodium_thioglycolate["Sodium thioglycolate"]
    CultureMech_009765 --> ing8_Sodium_thioglycolate
    CHEBI_86481["CHEBI:86481"]
    ing8_Sodium_thioglycolate -.-> CHEBI_86481
    ing9_Ascorbic_acid["Ascorbic acid"]
    CultureMech_009765 --> ing9_Ascorbic_acid
    CHEBI_22652["CHEBI:22652"]
    ing9_Ascorbic_acid -.-> CHEBI_22652
    ing10_Resazurin["Resazurin"]
    CultureMech_009765 --> ing10_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing10_Resazurin -.-> CHEBI_8806
    ing11_Distilled_water["Distilled water"]
    CultureMech_009765 --> ing11_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing11_Distilled_water -.-> CHEBI_15377

Ingredients (12)

# Ingredient Concentration Ontology Notes
1 K2HPO4
HO4P.2K 174.174 g/mol
0.5 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
JCM Medium 389 prints this component.
2 NH4Cl
Cl.H4N 53.492 g/mol
1.0 G_PER_L CHEBI:31206
ammonium chloride
JCM Medium 389 prints this component.
3 Na2SO4
2Na.O4S 142.043 g/mol
1.0 G_PER_L CHEBI:32149
sodium sulfate
JCM Medium 389 prints this component.
4 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
2.0 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
JCM Medium 389 prints this component.
5 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.1 G_PER_L CHEBI:86158
calcium chloride dihydrate
JCM Medium 389 prints this component.
6 Sodium lactate
C3H5O3.Na 112.06 g/mol
2.0 G_PER_L CHEBI:75228
sodium lactate
JCM Medium 389 prints this component.
7 Yeast extract 1.0 G_PER_L FOODON:03315426
yeast extract
JCM Medium 389 prints this component.
8 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.5 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
JCM Medium 389 prints this component.
9 Sodium thioglycolate
C2H3O2S.Na 114.101 g/mol
0.1 G_PER_L CHEBI:86481
sodium thioglycolate
JCM Medium 389 prints this component.
10 Ascorbic acid 0.1 G_PER_L CHEBI:22652
ascorbic acid
JCM Medium 389 prints this component.
11 Resazurin
C12H7NO4 229.191 g/mol
0.5 MG_PER_L CHEBI:8806
Resazurin
JCM Medium 389 prints this component.
12 Distilled water
H2O 18.015 g/mol
1.0 L CHEBI:15377
water
JCM Medium 389 lists 1.0 l distilled water.

Preparation

  1. Mix ingredients except FeSO4 x 7 H2O, sodium thioglycolate, and ascorbic acid.
  2. Bring the medium to a boil and cool to room temperature under an N2 gas stream.
  3. Add FeSO4 x 7 H2O in 10 mL distilled water plus sodium thioglycolate and ascorbic acid in 10 mL distilled water.
  4. Adjust pH to 7.8 with NaOH; adjust to pH 6.8-7.0 if necessary.
  5. While swirling under an N2 gas stream, dispense into culture vessels and seal with butyl rubber stoppers.
  6. Autoclave the sealed medium.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:54.954833Z togo-import Imported from TOGO Medium Source: JCM, ID: M384
2026-01-28T19:48:10.286223Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: NaOH; Added default concentration for ingredient: N2
2026-03-13T06:20:08.709461Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:009765
2026-03-17T06:29:46.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:27.705025+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Desulfovibrio Medium" to "desulfovibrio_medium" for consistent matching
2026-05-16T09:03:17.600204+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=1
2026-06-05T07:40:40.933200+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:30.184457+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:46:50.484569+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-06T00:00:00-07:00 repair_jcm_more_wrappers_score40.py RESOLVED_JCM_MORE_SCORE40_GRAPH TOGO M384 mirrors JCM Medium 389: Desulfovibrio Medium uses sulfate, sodium lactate, yeast extract, reducing agents, resazurin, and anoxic N2 handling.
2026-09-06T00:00:00-07:00 repair_jcm_more_wrappers_score40.py LINKED_JCM_MORE_SCORE40_CHILDREN JCM Medium 834 supplements JCM Medium 389 with Beef extract.
2026-09-13T00:00:00-07:00 repair_jcm_direct_wrapper_backlinks.py ADDED_JCM_DIRECT_WRAPPER_BACKLINKS Mirrored curated JCM direct-wrapper parent_media links on the parent record.