Overview
- External ontology
- TOGO:M384 — Desulfovibrio Medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.8, 'max': 7.0, 'notes': 'JCM Medium 389 says adjust pH to 6.8-7.0, if necessary.'}
- Notes
- TOGO M384 mirrors JCM Medium 389: Desulfovibrio Medium uses sulfate, sodium lactate, yeast extract, reducing agents, resazurin, and anoxic N2 handling.
Composition
flowchart LR
CultureMech_009765["desulfovibrio_medium"]
ing0_K2HPO4["K2HPO4"]
CultureMech_009765 --> ing0_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing0_K2HPO4 -.-> CHEBI_131527
ing1_NH4Cl["NH4Cl"]
CultureMech_009765 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_Na2SO4["Na2SO4"]
CultureMech_009765 --> ing2_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing2_Na2SO4 -.-> CHEBI_32149
ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_009765 --> ing3_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_009765 --> ing4_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
ing5_Sodium_lactate["Sodium lactate"]
CultureMech_009765 --> ing5_Sodium_lactate
CHEBI_75228["CHEBI:75228"]
ing5_Sodium_lactate -.-> CHEBI_75228
ing6_Yeast_extract["Yeast extract"]
CultureMech_009765 --> ing6_Yeast_extract
ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_009765 --> ing7_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
ing8_Sodium_thioglycolate["Sodium thioglycolate"]
CultureMech_009765 --> ing8_Sodium_thioglycolate
CHEBI_86481["CHEBI:86481"]
ing8_Sodium_thioglycolate -.-> CHEBI_86481
ing9_Ascorbic_acid["Ascorbic acid"]
CultureMech_009765 --> ing9_Ascorbic_acid
CHEBI_22652["CHEBI:22652"]
ing9_Ascorbic_acid -.-> CHEBI_22652
ing10_Resazurin["Resazurin"]
CultureMech_009765 --> ing10_Resazurin
CHEBI_8806["CHEBI:8806"]
ing10_Resazurin -.-> CHEBI_8806
ing11_Distilled_water["Distilled water"]
CultureMech_009765 --> ing11_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing11_Distilled_water -.-> CHEBI_15377
Ingredients (12)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
JCM Medium 389 prints this component. |
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
1.0 G_PER_L |
CHEBI:31206
ammonium chloride
|
JCM Medium 389 prints this component. |
| 3 |
Na2SO4
2Na.O4S 142.043 g/mol
|
1.0 G_PER_L |
CHEBI:32149
sodium sulfate
|
JCM Medium 389 prints this component. |
| 4 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
2.0 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
JCM Medium 389 prints this component. |
| 5 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
JCM Medium 389 prints this component. |
| 6 |
Sodium lactate
C3H5O3.Na 112.06 g/mol
|
2.0 G_PER_L |
CHEBI:75228
sodium lactate
|
JCM Medium 389 prints this component. |
| 7 | Yeast extract | 1.0 G_PER_L |
FOODON:03315426
yeast extract
|
JCM Medium 389 prints this component. |
| 8 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.5 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
JCM Medium 389 prints this component. |
| 9 |
Sodium thioglycolate
C2H3O2S.Na 114.101 g/mol
|
0.1 G_PER_L |
CHEBI:86481
sodium thioglycolate
|
JCM Medium 389 prints this component. |
| 10 | Ascorbic acid | 0.1 G_PER_L |
CHEBI:22652
ascorbic acid
|
JCM Medium 389 prints this component. |
| 11 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.5 MG_PER_L |
CHEBI:8806
Resazurin
|
JCM Medium 389 prints this component. |
| 12 |
Distilled water
H2O 18.015 g/mol
|
1.0 L |
CHEBI:15377
water
|
JCM Medium 389 lists 1.0 l distilled water. |
Preparation
- Mix ingredients except FeSO4 x 7 H2O, sodium thioglycolate, and ascorbic acid.
- Bring the medium to a boil and cool to room temperature under an N2 gas stream.
- Add FeSO4 x 7 H2O in 10 mL distilled water plus sodium thioglycolate and ascorbic acid in 10 mL distilled water.
- Adjust pH to 7.8 with NaOH; adjust to pH 6.8-7.0 if necessary.
- While swirling under an N2 gas stream, dispense into culture vessels and seal with butyl rubber stoppers.
- Autoclave the sealed medium.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.954833Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M384 |
| 2026-01-28T19:48:10.286223Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: NaOH; Added default concentration for ingredient: N2 |
| 2026-03-13T06:20:08.709461Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009765 |
| 2026-03-17T06:29:46.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:27.705025+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Desulfovibrio Medium" to "desulfovibrio_medium" for consistent matching |
| 2026-05-16T09:03:17.600204+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:40.933200+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:30.184457+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:50.484569+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-06T00:00:00-07:00 | repair_jcm_more_wrappers_score40.py | RESOLVED_JCM_MORE_SCORE40_GRAPH | TOGO M384 mirrors JCM Medium 389: Desulfovibrio Medium uses sulfate, sodium lactate, yeast extract, reducing agents, resazurin, and anoxic N2 handling. |
| 2026-09-06T00:00:00-07:00 | repair_jcm_more_wrappers_score40.py | LINKED_JCM_MORE_SCORE40_CHILDREN | JCM Medium 834 supplements JCM Medium 389 with Beef extract. |
| 2026-09-13T00:00:00-07:00 | repair_jcm_direct_wrapper_backlinks.py | ADDED_JCM_DIRECT_WRAPPER_BACKLINKS | Mirrored curated JCM direct-wrapper parent_media links on the parent record. |