Overview
- External ontology
- TOGO:M405 — Nutrient Agar With 50% Soil Extract And 5% NaCl
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M405 Original source: JCM - JCM_M407 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=407
Composition
flowchart LR
CultureMech_009789["nutrient_agar_with_50_soil_extract_and_5_nacl"]
ing0_Distilled_water["Distilled water"]
CultureMech_009789 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_NaCl["NaCl"]
CultureMech_009789 --> ing1_NaCl
CHEBI_26710["CHEBI:26710"]
ing1_NaCl -.-> CHEBI_26710
ing2_Agar["Agar"]
CultureMech_009789 --> ing2_Agar
CHEBI_2509["CHEBI:2509"]
ing2_Agar -.-> CHEBI_2509
ing3_Beef_extract["Beef extract"]
CultureMech_009789 --> ing3_Beef_extract
ing4_Peptone["Peptone"]
CultureMech_009789 --> ing4_Peptone
Ingredients (5)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
500 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 |
NaCl
Cl.Na 58.443 g/mol
|
50 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Defined component, Simple component, Inorganic compound |
| 3 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
Role: Solidifying component |
| 4 | Beef extract | 3 G_PER_L | Properties: Undefined component | |
| 5 | Peptone | 5 G_PER_L |
Solutions
Soil extract (see Medium [M94])
Dose: 500 G_PER_L
Cross-reference to Medium M94
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:54.997015Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M405 |
| 2026-01-28T19:48:16.869124Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-03-09T08:04:27.869052+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T06:20:08.895471Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009789 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-03-17T06:30:01.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:27.887472+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Nutrient Agar With 50% Soil Extract And 5% NaCl" to "nutrient_agar_with_50_soil_extract_and_5_nacl" for consistent matching |
| 2026-05-16T09:03:17.773607+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:41.120743+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |