Overview
- External ontology
- TOGO:M450 — GYPS Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M450 Original source: JCM - JCM_M449 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=449
Composition
flowchart LR
CultureMech_009837["gyps_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009837 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_Yeast_extract["Yeast extract"]
CultureMech_009837 --> ing1_Yeast_extract
ing2_MES["MES"]
CultureMech_009837 --> ing2_MES
CHEBI_39010["CHEBI:39010"]
ing2_MES -.-> CHEBI_39010
ing3_Sea_salts__Sigma_["Sea salts (Sigma)"]
CultureMech_009837 --> ing3_Sea_salts__Sigma_
ing4_Glucose["Glucose"]
CultureMech_009837 --> ing4_Glucose
CHEBI_17234["CHEBI:17234"]
ing4_Glucose -.-> CHEBI_17234
ing5_Peptone["Peptone"]
CultureMech_009837 --> ing5_Peptone
ing6_N2["N2"]
CultureMech_009837 --> ing6_N2
CHEBI_17997["CHEBI:17997"]
ing6_N2 -.-> CHEBI_17997
Ingredients (7)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 | Yeast extract | 0.5 G_PER_L | Role: Nutrient source; Properties: Undefined component | |
| 3 | MES | 3.9 G_PER_L |
CHEBI:39010
MES
|
Role: Buffer; Properties: Simple component, Organic compound, Defined component |
| 4 | Sea salts (Sigma) | 30 G_PER_L | Role: Mineral source; Properties: Defined component, Complex component | |
| 5 |
Glucose
C6H12O6 180.156 g/mol
|
5 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Defined component, Organic compound, Simple component |
| 6 | Peptone | 1 G_PER_L | ||
| 7 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: Gas |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.086111Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M450 |
| 2026-01-28T19:48:35.473894Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2 |
| 2026-03-13T06:20:09.286230Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009837 |
| 2026-03-17T06:30:40.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:28.260196+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "GYPS Medium" to "gyps_medium" for consistent matching |
| 2026-05-16T09:03:18.125472+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:41.503850+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |