Overview
- External ontology
- TOGO:M459 — Capnocytophaga Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M459 Original source: JCM - JCM_M459 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=459
Composition
flowchart LR
CultureMech_009846["capnocytophaga_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_009846 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_NaCl["NaCl"]
CultureMech_009846 --> ing1_NaCl
CHEBI_26710["CHEBI:26710"]
ing1_NaCl -.-> CHEBI_26710
ing2_KNO3["KNO3"]
CultureMech_009846 --> ing2_KNO3
CHEBI_63043["CHEBI:63043"]
ing2_KNO3 -.-> CHEBI_63043
ing3_Hemin["Hemin"]
CultureMech_009846 --> ing3_Hemin
CHEBI_50385["CHEBI:50385"]
ing3_Hemin -.-> CHEBI_50385
ing4_Glucose["Glucose"]
CultureMech_009846 --> ing4_Glucose
CHEBI_17234["CHEBI:17234"]
ing4_Glucose -.-> CHEBI_17234
ing5_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
CultureMech_009846 --> ing5_Yeast_extract__BD_Difco_
ing6_Trypticase_peptone__BD_BBL_["Trypticase peptone (BD-BBL)"]
CultureMech_009846 --> ing6_Trypticase_peptone__BD_BBL_
ing7_CO2["CO2"]
CultureMech_009846 --> ing7_CO2
CHEBI_16526["CHEBI:16526"]
ing7_CO2 -.-> CHEBI_16526
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Defined component, Inorganic compound, Simple component |
| 2 |
NaCl
Cl.Na 58.443 g/mol
|
3 G_PER_L |
CHEBI:26710
sodium chloride
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 3 |
KNO3
K.NO3 101.102 g/mol
|
3 G_PER_L |
CHEBI:63043
potassium nitrate
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Simple component |
| 4 |
Hemin
C34H32ClFeN4O4 651.952 g/mol
|
3 G_PER_L |
CHEBI:50385
hemin
|
Role: Growth factor; Properties: Defined component, Simple component, Organic compound |
| 5 |
Glucose
C6H12O6 180.156 g/mol
|
3 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Simple component, Organic compound, Defined component |
| 6 | Yeast extract (BD-Difco) | 3 G_PER_L | Properties: Undefined component | |
| 7 | Trypticase peptone (BD-BBL) | 17 G_PER_L | Properties: Undefined component | |
| 8 |
CO2
CO2 44.009 g/mol
|
variable VARIABLE |
CHEBI:16526
carbon dioxide
|
Properties: Gas |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.098094Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M459 |
| 2026-01-28T19:48:38.861602Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: CO2 |
| 2026-03-13T06:20:09.344294Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:009846 |
| 2026-03-17T06:30:48.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:28.314505+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Capnocytophaga Medium" to "capnocytophaga_medium" for consistent matching |
| 2026-05-16T09:03:18.166879+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:41.549543+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |