Overview
- External ontology
- TOGO:M638 — Fervidobacterium Tianchisum Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M638 Original source: JCM - JCM_M626 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=626
Composition
flowchart LR
CultureMech_010038["fervidobacterium_tianchisum_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_010038 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_7H2O["MgSO4・7H2O"]
CultureMech_010038 --> ing1_MgSO4_7H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_7H2O -.-> CHEBI_31795
ing2_CaCl2_2H2O["CaCl2・2H2O"]
CultureMech_010038 --> ing2_CaCl2_2H2O
CHEBI_86158["CHEBI:86158"]
ing2_CaCl2_2H2O -.-> CHEBI_86158
ing3_KH2PO4["KH2PO4"]
CultureMech_010038 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4_Na2MoO4_2H2O["Na2MoO4・2H2O"]
CultureMech_010038 --> ing4_Na2MoO4_2H2O
CHEBI_75213["CHEBI:75213"]
ing4_Na2MoO4_2H2O -.-> CHEBI_75213
ing5_Na2S_9H2O["Na2S・9H2O"]
CultureMech_010038 --> ing5_Na2S_9H2O
CHEBI_76209["CHEBI:76209"]
ing5_Na2S_9H2O -.-> CHEBI_76209
ing6_MnCl2_4H2O["MnCl2・4H2O"]
CultureMech_010038 --> ing6_MnCl2_4H2O
CHEBI_86368["CHEBI:86368"]
ing6_MnCl2_4H2O -.-> CHEBI_86368
ing7_CoCl2_6H2O["CoCl2・6H2O"]
CultureMech_010038 --> ing7_CoCl2_6H2O
CHEBI_35696["CHEBI:35696"]
ing7_CoCl2_6H2O -.-> CHEBI_35696
ing8_ZnSO4_7H2O["ZnSO4・7H2O"]
CultureMech_010038 --> ing8_ZnSO4_7H2O
CHEBI_32312["CHEBI:32312"]
ing8_ZnSO4_7H2O -.-> CHEBI_32312
ing9__NH4_2SO4["(NH4)2SO4"]
CultureMech_010038 --> ing9__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing9__NH4_2SO4 -.-> CHEBI_62946
ing10_CuSO4_5H2O["CuSO4・5H2O"]
CultureMech_010038 --> ing10_CuSO4_5H2O
CHEBI_31440["CHEBI:31440"]
ing10_CuSO4_5H2O -.-> CHEBI_31440
ing11_Sulfur__powder_["Sulfur (powder)"]
CultureMech_010038 --> ing11_Sulfur__powder_
CHEBI_33403["CHEBI:33403"]
ing11_Sulfur__powder_ -.-> CHEBI_33403
ing12_Na2B4O7_10H2O["Na2B4O7・10H2O"]
CultureMech_010038 --> ing12_Na2B4O7_10H2O
CHEBI_131366["CHEBI:131366"]
ing12_Na2B4O7_10H2O -.-> CHEBI_131366
ing13_Glucose["Glucose"]
CultureMech_010038 --> ing13_Glucose
CHEBI_17234["CHEBI:17234"]
ing13_Glucose -.-> CHEBI_17234
ing14_Tryptone__BD_Difco_["Tryptone (BD-Difco)"]
CultureMech_010038 --> ing14_Tryptone__BD_Difco_
ing15_H2SO4["H2SO4"]
CultureMech_010038 --> ing15_H2SO4
CHEBI_26836["CHEBI:26836"]
ing15_H2SO4 -.-> CHEBI_26836
ing16_N2["N2"]
CultureMech_010038 --> ing16_N2
CHEBI_17997["CHEBI:17997"]
ing16_N2 -.-> CHEBI_17997
Ingredients (17)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
1 G_PER_L |
CHEBI:15377
water
|
Role: Solvating media; Properties: Inorganic compound, Defined component, Simple component |
| 2 |
MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.25 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 3 |
CaCl2・2H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.07 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.28 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Inorganic compound, Defined component, Simple component |
| 5 |
Na2MoO4・2H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.03 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 6 |
Na2S・9H2O
9H2O.2Na.S 240.182 g/mol
|
0.5 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
Role: Reducing agent; Properties: Inorganic compound, Defined component, Simple component |
| 7 |
MnCl2・4H2O
Cl2Mn.4H2O 197.904 g/mol
|
1.8 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 8 |
CoCl2・6H2O
2Cl.Co 129.839 g/mol
|
0.01 G_PER_L |
CHEBI:35696
cobalt dichloride
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 9 |
ZnSO4・7H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.22 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 10 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
1.3 G_PER_L |
CHEBI:62946
ammonium sulfate
|
Role: Nitrogen source; Properties: Inorganic compound, Defined component, Simple component |
| 11 |
CuSO4・5H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.05 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 12 | Sulfur (powder) | 5 G_PER_L |
CHEBI:33403
elemental sulfur
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 13 |
Na2B4O7・10H2O
10H2O.H4B4O9.2Na 417.401 g/mol
|
4.5 G_PER_L |
CHEBI:131366
disodium tetraborate decahydrate
|
Role: Mineral source; Properties: Inorganic compound, Defined component, Simple component |
| 14 |
Glucose
C6H12O6 180.156 g/mol
|
5 G_PER_L |
CHEBI:17234
glucose
|
Role: Carbon source; Properties: Organic compound, Defined component, Simple component |
| 15 | Tryptone (BD-Difco) | 4 G_PER_L | Properties: Undefined component | |
| 16 |
H2SO4
H2O4S 98.079 g/mol
|
variable VARIABLE |
CHEBI:26836
sulfuric acid
|
Role: Mineral source; Properties: Defined component, Inorganic compound, Solution |
| 17 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
Properties: Gas |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-06-14T05:58:58.561437+00:00 | idnf-grounding-fix-v1.0 | Fixed ID_NOT_FOUND term groundings | Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable). |
| 2026-01-27T06:35:55.442745Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M638 |
| 2026-01-28T19:48:33.197373Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: H2SO4; Added default concentration for ingredient: N2 |
| 2026-03-13T06:20:10.869762Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010038 |
| 2026-03-17T06:30:35.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:29.796960+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Fervidobacterium Tianchisum Medium" to "fervidobacterium_tianchisum_medium" for consistent matching |
| 2026-05-16T09:03:19.663443+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:40:43.150133+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 5 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:31.973239+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:51.200948+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |