magnetospirillum_gryphiswaldense_medium

CultureMech:010082 bacterial COMPLEX SOLID_AGAR
Original name: Magnetospirillum Gryphiswaldense Medium

Overview

External ontology
TOGO:M678 — Magnetospirillum Gryphiswaldense Medium
Applications
  • Microbial cultivation
Notes
Source: https://togomedium.org/medium/M678 Original source: JCM - JCM_M660-2 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=660

Composition

flowchart LR
    CultureMech_010082["magnetospirillum_gryphiswaldense_medium"]
    ing0_Distilled_water["Distilled water"]
    CultureMech_010082 --> ing0_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing0_Distilled_water -.-> CHEBI_15377
    ing1_MgSO4_7H2O["MgSO4・7H2O"]
    CultureMech_010082 --> ing1_MgSO4_7H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_7H2O -.-> CHEBI_31795
    ing2_NH4Cl["NH4Cl"]
    CultureMech_010082 --> ing2_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing2_NH4Cl -.-> CHEBI_31206
    ing3_K2HPO4["K2HPO4"]
    CultureMech_010082 --> ing3_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing3_K2HPO4 -.-> CHEBI_131527
    ing4_Sodium_acetate["Sodium acetate"]
    CultureMech_010082 --> ing4_Sodium_acetate
    CHEBI_32954["CHEBI:32954"]
    ing4_Sodium_acetate -.-> CHEBI_32954
    ing5_Ferric_citrate["Ferric citrate"]
    CultureMech_010082 --> ing5_Ferric_citrate
    CHEBI_144421["CHEBI:144421"]
    ing5_Ferric_citrate -.-> CHEBI_144421
    ing6_agar["agar"]
    CultureMech_010082 --> ing6_agar
    CHEBI_2509["CHEBI:2509"]
    ing6_agar -.-> CHEBI_2509
    ing7_Yeast_extract__BD_Difco_["Yeast extract (BD-Difco)"]
    CultureMech_010082 --> ing7_Yeast_extract__BD_Difco_
    ing8_Sodium_thioglycolate["Sodium thioglycolate"]
    CultureMech_010082 --> ing8_Sodium_thioglycolate
    CHEBI_86481["CHEBI:86481"]
    ing8_Sodium_thioglycolate -.-> CHEBI_86481

Ingredients (9)

# Ingredient Concentration Ontology Notes
1 Distilled water
H2O 18.015 g/mol
1 G_PER_L CHEBI:15377
water
 Role: Solvating media; Properties: Simple component, Inorganic compound, Defined component
2 MgSO4・7H2O
7H2O.Mg.O4S 246.473 g/mol
0.1 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
 Role: Mineral source; Properties: Inorganic compound, Simple component, Defined component
3 NH4Cl
Cl.H4N 53.492 g/mol
0.1 G_PER_L CHEBI:31206
ammonium chloride
 Role: Nitrogen source; Properties: Defined component, Simple component, Inorganic compound
4 K2HPO4
HO4P.2K 174.174 g/mol
0.5 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
 Role: Buffer; Properties: Simple component, Inorganic compound, Defined component
5 Sodium acetate
C2H3O2.Na 82.034 g/mol
1 G_PER_L CHEBI:32954
sodium acetate
 Role: Buffer; Properties: Defined component, Organic compound, Simple component
6 Ferric citrate
C6H5FeO7 244.944 g/mol
6 G_PER_L CHEBI:144421
iron(III) citrate
 Role: Mineral source; Properties: Defined component, Organic compound, Simple component
7 agar 1 G_PER_L CHEBI:2509
agar
 Role: Solidifying component
8 Yeast extract (BD-Difco) 0.1 G_PER_L Properties: Undefined component
9 Sodium thioglycolate
C2H3O2S.Na 114.101 g/mol
0.5 G_PER_L CHEBI:86481
sodium thioglycolate
 Properties: Defined component, Simple component, Organic compound

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:55.513627Z togo-import Imported from TOGO Medium Source: JCM, ID: M678
2026-01-28T19:48:36.943656Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-03-13T06:20:11.174959Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:010082
2026-03-17T06:30:44.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:30.100414+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Magnetospirillum Gryphiswaldense Medium" to "magnetospirillum_gryphiswaldense_medium" for consistent matching
2026-06-05T07:40:43.487983+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T06:57:32.276274+00:00 mgso4-heptahydrate-term-fix-v1.0 Corrected MgSO4·7H2O primary term grounding to heptahydrate Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched.
2026-06-10T07:46:51.317154+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.