Overview
- External ontology
- TOGO:M721 — MJY Medium For Pyrolinea Marinus
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.0, 'max': 6.5}
- Notes
- MediaDive J700 and TOGO M721 describe JCM Medium 700 MJY Medium for Pyrolinea marinus as 1.0 L MJ(-N) synthetic seawater supplemented with 1.0 g/L Yeast extract, 0.25 g/L NH4Cl, and 0.5 g/L NaNO3; after anaerobic autoclaving, 5.0 ml/L 8% NaHCO3 and 10.0 ml/L 5% Na2S x 9 H2O solutions are added and the final pH is checked at 6.0-6.5.
Composition
flowchart LR
CultureMech_010129["mjy_medium_for_pyrolinea_marinus"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_010129 --> ing0_Yeast_extract
ing1_NH4Cl["NH4Cl"]
CultureMech_010129 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_NaNO3["NaNO3"]
CultureMech_010129 --> ing2_NaNO3
CHEBI_63005["CHEBI:63005"]
ing2_NaNO3 -.-> CHEBI_63005
Ingredients (3)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 1.0 G_PER_L |
FOODON:03315426
yeast extract
|
TOGO M721 / JCM Medium 700 lists 1.0 g/L Yeast extract. |
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.25 G_PER_L |
CHEBI:31206
ammonium chloride
|
TOGO M721 / JCM Medium 700 lists 0.25 g/L NH4Cl. |
| 3 |
NaNO3
NO3.Na 84.994 g/mol
|
0.5 G_PER_L |
CHEBI:63005
sodium nitrate
|
TOGO M721 / JCM Medium 700 lists 0.5 g/L NaNO3. |
Preparation
- Mix 1.0 L MJ(-N) synthetic seawater, NH4Cl, NaNO3, and Yeast extract thoroughly; distribute the medium into culture vessels under a N2-CO2 (4:1, v/v) gas mixture, seal with butyl rubber stoppers, and autoclave.
- After cooling, add 5.0 ml/L 8% NaHCO3 solution and 10.0 ml/L 5% Na2S x 9 H2O solution that were filter-sterilized or autoclaved and stored anaerobically.
- Pressurize the culture vessels to 200 kPa N2-CO2 (4:1, v/v) and check the final pH at 6.0-6.5.
- MJ(-N) synthetic seawater can be replaced with a commercial synthetic seawater such as Jamarin S. For strain JCM 15506, inoculate with a 5-10% inoculum.
Solutions
MJ(-N) synthetic seawater
Dose: 1000.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaCl | 30.0 G_PER_L | TOGO M260 / JCM Medium 268 lists 30.0 g/L NaCl. |
| K2HPO4 | 0.14 G_PER_L | TOGO M260 / JCM Medium 268 lists 0.14 g/L K2HPO4. |
| CaCl2 x 2 H2O | 0.14 G_PER_L | TOGO M260 / JCM Medium 268 lists 0.14 g/L CaCl2 x 2 H2O. |
| MgSO4 x 7 H2O | 3.4 G_PER_L | TOGO M260 / JCM Medium 268 lists 3.4 g/L MgSO4 x 7 H2O. |
| MgCl2 x 6 H2O | 4.18 G_PER_L | TOGO M260 / JCM Medium 268 lists 4.18 g/L MgCl2 x 6 H2O. |
| KCl | 0.33 G_PER_L | TOGO M260 / JCM Medium 268 lists 0.33 g/L KCl. |
| NiCl2 x 6 H2O | 0.5 MG_PER_L | TOGO M260 / JCM Medium 268 lists 0.5 mg/L NiCl2 x 6 H2O. |
| Na2SeO3 x 5 H2O | 0.5 MG_PER_L | TOGO M260 / JCM Medium 268 lists 0.5 mg/L Na2SeO3 x 5 H2O. |
| Fe(NH4)2(SO4)2 x 6 H2O | 0.01 G_PER_L | TOGO M260 / JCM Medium 268 lists 0.01 g/L Fe(NH4)2(SO4)2 x 6 H2O. |
| Trace minerals | 10.0 ML_PER_L | TOGO M260/JCM Medium 268 adds 10.0 ml/L Trace minerals from TOGO M142. |
| Distilled water | 1.0 L | TOGO M260/JCM Medium 268 lists 1.0 L Distilled water. |
TOGO M721 / JCM Medium 700 adds 1.0 L MJ(-N) synthetic seawater from TOGO M260/JCM Medium 268.
8% NaHCO3 solution
Dose: 5.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaHCO3 | 8.0 PERCENT_W_V | TOGO M721 / JCM Medium 700 specifies the added NaHCO3 solution as 8% w/v. |
TOGO M721 / JCM Medium 700 adds 5.0 ml/L 8% NaHCO3 solution after cooling.
5% Na2S x 9 H2O solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S x 9 H2O | 5.0 PERCENT_W_V | TOGO M721 / JCM Medium 700 specifies the added Na2S x 9 H2O solution as 5% w/v. |
TOGO M721 / JCM Medium 700 adds 10.0 ml/L 5% Na2S x 9 H2O solution after cooling.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.598368Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M721 |
| 2026-01-28T19:48:37.222908Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas; Added default concentration for ingredient: Carbon dioxide gas; Added default concentration for ingredient: Nitrogen gas |
| 2026-03-09T08:05:02.098169+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 3 solution(s) from ingredients |
| 2026-03-13T03:09:33.966326Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 2 duplicate ingredient(s) |
| 2026-03-13T06:20:11.544905Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010129 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:44.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:30.475693+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MJY Medium For Pyrolinea Marinus" to "mjy_medium_for_pyrolinea_marinus" for consistent matching |
| 2026-05-16T09:03:20.374211+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:43.888688+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:51.461776+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m721_m722_score15.py | RESOLVED_TOGO_M721_MJY_MEDIUM | Moved MJ(-N) synthetic seawater, 8% NaHCO3, and 5% Na2S x 9 H2O from empty solution stubs into structured solution entries, removed gas placeholders in favor of anaerobic preparation steps, added the final pH range, and linked the MediaDive J700 source duplicate. |