dethiosulfovibrio_ii_medium

CultureMech:010192 bacterial COMPLEX LIQUID
Original name: Dethiosulfovibrio II Medium

Overview

External ontology
TOGO:M783 — Dethiosulfovibrio II Medium
Applications
  • Microbial cultivation
pH range
{'min': 6.7, 'max': 6.8}
Notes
JCM Medium 758, MediaDive J758, and TOGO M783 describe Dethiosulfovibrio II Medium as a 1.034 L anoxic N2 medium containing 1.0 L distilled water, 1.0 ml each of FeCl2 solution and Trace element solution from JCM Medium 187, 0.5 mg resazurin, 2.0 ml 10% CaCl2 x 2 H2O, 20.0 ml 12.5% Na2S2O3 x 5 H2O, and 10.0 ml 5% Na2S x 9 H2O stocks.

Composition

flowchart LR
    CultureMech_010192["dethiosulfovibrio_ii_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_010192 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_010192 --> ing1_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing2_KH2PO4["KH2PO4"]
    CultureMech_010192 --> ing2_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing2_KH2PO4 -.-> CHEBI_63036
    ing3_Trisodium_citrate_x_H2O["Trisodium citrate x H2O"]
    CultureMech_010192 --> ing3_Trisodium_citrate_x_H2O
    CHEBI_53258["CHEBI:53258"]
    ing3_Trisodium_citrate_x_H2O -.-> CHEBI_53258
    ing4_Yeast_extract["Yeast extract"]
    CultureMech_010192 --> ing4_Yeast_extract
    ing5_Bacto_peptone["Bacto peptone"]
    CultureMech_010192 --> ing5_Bacto_peptone
    ing6_Resazurin["Resazurin"]
    CultureMech_010192 --> ing6_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing6_Resazurin -.-> CHEBI_8806
    ing7_Distilled_water["Distilled water"]
    CultureMech_010192 --> ing7_Distilled_water
    CHEBI_15377["CHEBI:15377"]
    ing7_Distilled_water -.-> CHEBI_15377

Ingredients (8)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
19.3424 G_PER_L CHEBI:26710
sodium chloride
TOGO M783 / JCM Medium 758 lists 19.3424 g/L NaCl.
2 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
2.90135 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
TOGO M783 / JCM Medium 758 lists 2.90135 g/L MgCl2 x 6 H2O.
3 KH2PO4
H2O4P.K 136.084 g/mol
0.967118 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
TOGO M783 / JCM Medium 758 lists 0.967118 g/L KH2PO4.
4 Trisodium citrate x H2O
C6H5O7.3Na 258.069 g/mol
2.90135 G_PER_L CHEBI:53258
sodium citrate
TOGO M783 / JCM Medium 758 lists 2.90135 g/L Trisodium citrate x H2O.
5 Yeast extract 4.83559 G_PER_L FOODON:03315426
yeast extract
TOGO M783 / JCM Medium 758 lists 4.83559 g/L Yeast extract.
6 Bacto peptone 1.93424 G_PER_L TOGO M783 / JCM Medium 758 lists 1.93424 g/L Bacto peptone.
7 Resazurin
C12H7NO4 229.191 g/mol
0.483559 MG_PER_L CHEBI:8806
Resazurin
TOGO M783 / JCM Medium 758 lists 0.483559 mg/L Resazurin.
8 Distilled water
H2O 18.015 g/mol
967.118 ML_PER_L CHEBI:15377
water
TOGO M783 / JCM Medium 758 contributes 967.118 ml/L distilled water.

Preparation

  1. Mix main-solution components including FeCl2 solution, Trace element solution, and 967.118 ml/L distilled water under a N2 atmosphere.
  2. Autoclave the main solution under a N2 atmosphere.
  3. After cooling, add 1.93424 ml/L 10% CaCl2 x 2 H2O solution, 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution, and 9.67118 ml/L 5% Na2S x 9 H2O solution from sterile anaerobic stocks stored under N2; the thiosulfate stock is filter-sterilized.
  4. Adjust pH to 6.7-6.8 if necessary.

Solutions

FeCl2 solution

Dose: 0.967118 ML_PER_L

Stock composition
IngredientConcentrationNotes
HCl 2.5 G_PER_L JCM Medium 187 lists 2.5 g/L HCl.
FeCl2 x 4 H2O 1.5 G_PER_L JCM Medium 187 lists 1.5 g/L FeCl2 x 4 H2O.
Distilled water 990.0 ML_PER_L JCM Medium 187 makes FeCl2 solution with 990.0 ml water.
TOGO M783 / JCM Medium 758 adds 0.967118 ml/L FeCl2 solution.

Trace element solution

Dose: 0.967118 ML_PER_L

Stock composition
IngredientConcentrationNotes
ZnCl2 70.0 MG_PER_L JCM Medium 187 lists 70.0 mg/L ZnCl2.
MnCl2 x 4 H2O 100.0 MG_PER_L JCM Medium 187 lists 100.0 mg/L MnCl2 x 4 H2O.
H3BO3 6.0 MG_PER_L JCM Medium 187 lists 6.0 mg/L H3BO3.
CoCl2 x 6 H2O 190.0 MG_PER_L JCM Medium 187 lists 190.0 mg/L CoCl2 x 6 H2O.
CuCl2 x 2 H2O 2.0 MG_PER_L JCM Medium 187 lists 2.0 mg/L CuCl2 x 2 H2O.
NiCl2 x 6 H2O 24.0 MG_PER_L JCM Medium 187 lists 24.0 mg/L NiCl2 x 6 H2O.
Na2MoO4 x 2 H2O 36.0 MG_PER_L JCM Medium 187 lists 36.0 mg/L Na2MoO4 x 2 H2O.
Distilled water 1000.0 ML_PER_L JCM Medium 187 makes Trace element solution up to 1.0 L.
TOGO M783 / JCM Medium 758 adds 0.967118 ml/L Trace element solution.

10% CaCl2 x 2 H2O solution

Dose: 1.93424 ML_PER_L

Stock composition
IngredientConcentrationNotes
CaCl2 x 2 H2O 10.0 PERCENT_W_V TOGO M783 / JCM Medium 758 specifies 10% CaCl2 x 2 H2O solution as 10.0% w/v.
TOGO M783 / JCM Medium 758 adds 1.93424 ml/L 10% CaCl2 x 2 H2O solution.

12.5% Na2S2O3 x 5 H2O solution

Dose: 19.3424 ML_PER_L

Stock composition
IngredientConcentrationNotes
Na2S2O3 x 5 H2O 12.5 PERCENT_W_V TOGO M783 / JCM Medium 758 specifies 12.5% Na2S2O3 x 5 H2O solution as 12.5% w/v.
TOGO M783 / JCM Medium 758 adds 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution.

5% Na2S x 9 H2O solution

Dose: 9.67118 ML_PER_L

Stock composition
IngredientConcentrationNotes
Na2S x 9 H2O 5.0 PERCENT_W_V TOGO M783 / JCM Medium 758 specifies 5% Na2S x 9 H2O solution as 5.0% w/v.
TOGO M783 / JCM Medium 758 adds 9.67118 ml/L 5% Na2S x 9 H2O solution.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-27T06:35:55.707391Z togo-import Imported from TOGO Medium Source: JCM, ID: M783
2026-01-28T19:48:08.148189Z chebi-enrichment Added CHEBI ontology terms to ingredients Enriched using MicrobeMediaParam and MediaDive chemical mappings
2026-02-03T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: N2
2026-03-09T08:04:13.115806+00:00 solution-migrator-v1.0 Migrated solutions from ingredients to solutions array Moved 5 solution(s) from ingredients
2026-03-13T06:20:12.010165Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:010192
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default solution name; Added default solution name; Added default solution name; Added default solution name; Added default solution name
2026-03-17T06:29:42.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:30.947184+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "Dethiosulfovibrio II Medium" to "dethiosulfovibrio_ii_medium" for consistent matching
2026-05-16T09:03:20.853066+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=2
2026-06-05T07:40:44.423438+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:51.633361+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-11T00:00:00-07:00 repair_togo_m783_dethiosulfovibrio_score15.py RESOLVED_TOGO_M783_DETHIOSULFOVIBRIO_II_MEDIUM Moved FeCl2 solution, Trace element solution, 10% CaCl2 x 2 H2O, 12.5% Na2S2O3 x 5 H2O, and 5% Na2S x 9 H2O from empty solution stubs into structured solution entries, removed the N2 placeholder in favor of anaerobic preparation steps, corrected resazurin and water units, and linked the MediaDive J758 source duplicate.