Overview
- External ontology
- TOGO:M783 — Dethiosulfovibrio II Medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 6.7, 'max': 6.8}
- Notes
- JCM Medium 758, MediaDive J758, and TOGO M783 describe Dethiosulfovibrio II Medium as a 1.034 L anoxic N2 medium containing 1.0 L distilled water, 1.0 ml each of FeCl2 solution and Trace element solution from JCM Medium 187, 0.5 mg resazurin, 2.0 ml 10% CaCl2 x 2 H2O, 20.0 ml 12.5% Na2S2O3 x 5 H2O, and 10.0 ml 5% Na2S x 9 H2O stocks.
Composition
flowchart LR
CultureMech_010192["dethiosulfovibrio_ii_medium"]
ing0_NaCl["NaCl"]
CultureMech_010192 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_010192 --> ing1_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
ing2_KH2PO4["KH2PO4"]
CultureMech_010192 --> ing2_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing2_KH2PO4 -.-> CHEBI_63036
ing3_Trisodium_citrate_x_H2O["Trisodium citrate x H2O"]
CultureMech_010192 --> ing3_Trisodium_citrate_x_H2O
CHEBI_53258["CHEBI:53258"]
ing3_Trisodium_citrate_x_H2O -.-> CHEBI_53258
ing4_Yeast_extract["Yeast extract"]
CultureMech_010192 --> ing4_Yeast_extract
ing5_Bacto_peptone["Bacto peptone"]
CultureMech_010192 --> ing5_Bacto_peptone
ing6_Resazurin["Resazurin"]
CultureMech_010192 --> ing6_Resazurin
CHEBI_8806["CHEBI:8806"]
ing6_Resazurin -.-> CHEBI_8806
ing7_Distilled_water["Distilled water"]
CultureMech_010192 --> ing7_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing7_Distilled_water -.-> CHEBI_15377
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
19.3424 G_PER_L |
CHEBI:26710
sodium chloride
|
TOGO M783 / JCM Medium 758 lists 19.3424 g/L NaCl. |
| 2 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
2.90135 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
TOGO M783 / JCM Medium 758 lists 2.90135 g/L MgCl2 x 6 H2O. |
| 3 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.967118 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
TOGO M783 / JCM Medium 758 lists 0.967118 g/L KH2PO4. |
| 4 |
Trisodium citrate x H2O
C6H5O7.3Na 258.069 g/mol
|
2.90135 G_PER_L |
CHEBI:53258
sodium citrate
|
TOGO M783 / JCM Medium 758 lists 2.90135 g/L Trisodium citrate x H2O. |
| 5 | Yeast extract | 4.83559 G_PER_L |
FOODON:03315426
yeast extract
|
TOGO M783 / JCM Medium 758 lists 4.83559 g/L Yeast extract. |
| 6 | Bacto peptone | 1.93424 G_PER_L | TOGO M783 / JCM Medium 758 lists 1.93424 g/L Bacto peptone. | |
| 7 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.483559 MG_PER_L |
CHEBI:8806
Resazurin
|
TOGO M783 / JCM Medium 758 lists 0.483559 mg/L Resazurin. |
| 8 |
Distilled water
H2O 18.015 g/mol
|
967.118 ML_PER_L |
CHEBI:15377
water
|
TOGO M783 / JCM Medium 758 contributes 967.118 ml/L distilled water. |
Preparation
- Mix main-solution components including FeCl2 solution, Trace element solution, and 967.118 ml/L distilled water under a N2 atmosphere.
- Autoclave the main solution under a N2 atmosphere.
- After cooling, add 1.93424 ml/L 10% CaCl2 x 2 H2O solution, 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution, and 9.67118 ml/L 5% Na2S x 9 H2O solution from sterile anaerobic stocks stored under N2; the thiosulfate stock is filter-sterilized.
- Adjust pH to 6.7-6.8 if necessary.
Solutions
FeCl2 solution
Dose: 0.967118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| HCl | 2.5 G_PER_L | JCM Medium 187 lists 2.5 g/L HCl. |
| FeCl2 x 4 H2O | 1.5 G_PER_L | JCM Medium 187 lists 1.5 g/L FeCl2 x 4 H2O. |
| Distilled water | 990.0 ML_PER_L | JCM Medium 187 makes FeCl2 solution with 990.0 ml water. |
TOGO M783 / JCM Medium 758 adds 0.967118 ml/L FeCl2 solution.
Trace element solution
Dose: 0.967118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| ZnCl2 | 70.0 MG_PER_L | JCM Medium 187 lists 70.0 mg/L ZnCl2. |
| MnCl2 x 4 H2O | 100.0 MG_PER_L | JCM Medium 187 lists 100.0 mg/L MnCl2 x 4 H2O. |
| H3BO3 | 6.0 MG_PER_L | JCM Medium 187 lists 6.0 mg/L H3BO3. |
| CoCl2 x 6 H2O | 190.0 MG_PER_L | JCM Medium 187 lists 190.0 mg/L CoCl2 x 6 H2O. |
| CuCl2 x 2 H2O | 2.0 MG_PER_L | JCM Medium 187 lists 2.0 mg/L CuCl2 x 2 H2O. |
| NiCl2 x 6 H2O | 24.0 MG_PER_L | JCM Medium 187 lists 24.0 mg/L NiCl2 x 6 H2O. |
| Na2MoO4 x 2 H2O | 36.0 MG_PER_L | JCM Medium 187 lists 36.0 mg/L Na2MoO4 x 2 H2O. |
| Distilled water | 1000.0 ML_PER_L | JCM Medium 187 makes Trace element solution up to 1.0 L. |
TOGO M783 / JCM Medium 758 adds 0.967118 ml/L Trace element solution.
10% CaCl2 x 2 H2O solution
Dose: 1.93424 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| CaCl2 x 2 H2O | 10.0 PERCENT_W_V | TOGO M783 / JCM Medium 758 specifies 10% CaCl2 x 2 H2O solution as 10.0% w/v. |
TOGO M783 / JCM Medium 758 adds 1.93424 ml/L 10% CaCl2 x 2 H2O solution.
12.5% Na2S2O3 x 5 H2O solution
Dose: 19.3424 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S2O3 x 5 H2O | 12.5 PERCENT_W_V | TOGO M783 / JCM Medium 758 specifies 12.5% Na2S2O3 x 5 H2O solution as 12.5% w/v. |
TOGO M783 / JCM Medium 758 adds 19.3424 ml/L 12.5% Na2S2O3 x 5 H2O solution.
5% Na2S x 9 H2O solution
Dose: 9.67118 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S x 9 H2O | 5.0 PERCENT_W_V | TOGO M783 / JCM Medium 758 specifies 5% Na2S x 9 H2O solution as 5.0% w/v. |
TOGO M783 / JCM Medium 758 adds 9.67118 ml/L 5% Na2S x 9 H2O solution.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.707391Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M783 |
| 2026-01-28T19:48:08.148189Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2 |
| 2026-03-09T08:04:13.115806+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 5 solution(s) from ingredients |
| 2026-03-13T06:20:12.010165Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010192 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:29:42.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:30.947184+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "Dethiosulfovibrio II Medium" to "dethiosulfovibrio_ii_medium" for consistent matching |
| 2026-05-16T09:03:20.853066+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:44.423438+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:51.633361+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m783_dethiosulfovibrio_score15.py | RESOLVED_TOGO_M783_DETHIOSULFOVIBRIO_II_MEDIUM | Moved FeCl2 solution, Trace element solution, 10% CaCl2 x 2 H2O, 12.5% Na2S2O3 x 5 H2O, and 5% Na2S x 9 H2O from empty solution stubs into structured solution entries, removed the N2 placeholder in favor of anaerobic preparation steps, corrected resazurin and water units, and linked the MediaDive J758 source duplicate. |