Overview
- External ontology
- TOGO:M860 — KOKO Medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.0, 'max': 7.0}
- Notes
- JCM Medium 825 / KOKO Medium lists 930.0 ml/L distilled water, 0.16 g/L MgSO4 x 7 H2O, 1.0 g/L yeast extract, 0.06 g/L CaCl2 x 2 H2O, 0.5 g/L NH4Cl, 1.6 g/L K2HPO4, 0.5 mg/L resazurin, 1.0 g/L NaH2PO4 x 2 H2O, 1.0 g/L BD-Difco tryptone, 1.0 g/L peptone, 10.0 ml/L SL-4 trace element solution, 10.0 ml/L Trace vitamins, N2 gas, and sterile anaerobic 8% NaHCO3, 10% glucose, 3% Na2S x 9 H2O, and 3% L-cysteine HCl x H2O stocks; MediaDive J825 reports the same recipe at pH 7.0.
Composition
flowchart LR
CultureMech_010277["koko_medium"]
ing0_Distilled_water["Distilled water"]
CultureMech_010277 --> ing0_Distilled_water
CHEBI_15377["CHEBI:15377"]
ing0_Distilled_water -.-> CHEBI_15377
ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_010277 --> ing1_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
ing2_Yeast_extract["Yeast extract"]
CultureMech_010277 --> ing2_Yeast_extract
ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_010277 --> ing3_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
ing4_NH4Cl["NH4Cl"]
CultureMech_010277 --> ing4_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing4_NH4Cl -.-> CHEBI_31206
ing5_K2HPO4["K2HPO4"]
CultureMech_010277 --> ing5_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing5_K2HPO4 -.-> CHEBI_131527
ing6_Resazurin["Resazurin"]
CultureMech_010277 --> ing6_Resazurin
CHEBI_8806["CHEBI:8806"]
ing6_Resazurin -.-> CHEBI_8806
ing7_NaH2PO4_x_2_H2O["NaH2PO4 x 2 H2O"]
CultureMech_010277 --> ing7_NaH2PO4_x_2_H2O
CHEBI_37585["CHEBI:37585"]
ing7_NaH2PO4_x_2_H2O -.-> CHEBI_37585
ing8_Tryptone__BD_Difco_["Tryptone (BD-Difco)"]
CultureMech_010277 --> ing8_Tryptone__BD_Difco_
ing9_Peptone["Peptone"]
CultureMech_010277 --> ing9_Peptone
ing10_N2["N2"]
CultureMech_010277 --> ing10_N2
CHEBI_17997["CHEBI:17997"]
ing10_N2 -.-> CHEBI_17997
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Distilled water
H2O 18.015 g/mol
|
930.0 ML_PER_L |
CHEBI:15377
water
|
TOGO M860 / JCM Medium 825 lists 930.0 ml/L Distilled water. |
| 2 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.16 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
TOGO M860 / JCM Medium 825 lists 0.16 g/L MgSO4 x 7 H2O. |
| 3 | Yeast extract | 1.0 G_PER_L |
FOODON:03315426
Yeast extract
|
TOGO M860 / JCM Medium 825 lists 1.0 g/L Yeast extract. |
| 4 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.06 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
TOGO M860 / JCM Medium 825 lists 0.06 g/L CaCl2 x 2 H2O. |
| 5 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.5 G_PER_L |
CHEBI:31206
ammonium chloride
|
TOGO M860 / JCM Medium 825 lists 0.5 g/L NH4Cl. |
| 6 |
K2HPO4
HO4P.2K 174.174 g/mol
|
1.6 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
TOGO M860 / JCM Medium 825 lists 1.6 g/L K2HPO4. |
| 7 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.5 MG_PER_L |
CHEBI:8806
Resazurin
|
TOGO M860 / JCM Medium 825 lists 0.5 mg/L Resazurin. |
| 8 |
NaH2PO4 x 2 H2O
H2O4P.Na 119.976 g/mol
|
1.0 G_PER_L |
CHEBI:37585
sodium dihydrogenphosphate
|
TOGO M860 / JCM Medium 825 lists 1.0 g/L NaH2PO4 x 2 H2O. |
| 9 | Tryptone (BD-Difco) | 1.0 G_PER_L |
MICRO:0000182 (source link unavailable)
Tryptone
|
TOGO M860 / JCM Medium 825 lists 1.0 g/L Tryptone (BD-Difco). |
| 10 | Peptone | 1.0 G_PER_L |
MICRO:0000178 (source link unavailable)
Peptone
|
TOGO M860 / JCM Medium 825 lists 1.0 g/L Peptone. |
| 11 |
N2
N2 28.014 g/mol
|
variable VARIABLE |
CHEBI:17997
dinitrogen
|
TOGO M860 / JCM Medium 825 lists N2 as an atmosphere component with no fixed liquid-phase concentration. |
Preparation
- Mix the basal salts, yeast extract, BD-Difco tryptone, peptone, resazurin, 10.0 ml/L Trace element solution SL-4, 10.0 ml/L Trace vitamins, and 930.0 ml/L distilled water.
- Adjust the medium to pH 7.0.
- Autoclave the medium under an N2 atmosphere.
- After autoclaving, add 1.25 ml/L sterile anaerobic 8% NaHCO3 solution, 50.0 ml/L 10% glucose solution, 10.0 ml/L 3% Na2S x 9 H2O solution, and 10.0 ml/L 3% L-cysteine HCl x H2O solution.
Solutions
Trace element solution SL-4
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| EDTA | 0.5 G_PER_L | TOGO M860 / JCM Medium 825 lists 0.5 g/L EDTA. |
| FeSO4 x 7 H2O | 0.2 G_PER_L | TOGO M860 / JCM Medium 825 lists 0.2 g/L FeSO4 x 7 H2O. |
| ZnSO4 x 7 H2O | 0.01 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.1 g/L ZnSO4 x 7 H2O in SL-6 contributes 0.01 g/L in SL-4. |
| MnCl2 x 4 H2O | 0.003 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.03 g/L MnCl2 x 4 H2O in SL-6 contributes 0.003 g/L in SL-4. |
| H3BO3 | 0.03 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.3 g/L H3BO3 in SL-6 contributes 0.03 g/L in SL-4. |
| CoCl2 x 6 H2O | 0.02 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.2 g/L CoCl2 x 6 H2O in SL-6 contributes 0.02 g/L in SL-4. |
| CuCl2 x 2 H2O | 0.001 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.01 g/L CuCl2 x 2 H2O in SL-6 contributes 0.001 g/L in SL-4. |
| NiCl2 x 6 H2O | 0.002 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.02 g/L NiCl2 x 6 H2O in SL-6 contributes 0.002 g/L in SL-4. |
| Na2MoO4 x 2 H2O | 0.003 G_PER_L | TOGO M860 / JCM Medium 825 expands 100.0 ml/L Trace element solution SL-6 into Trace element solution SL-4; 0.03 g/L Na2MoO4 x 2 H2O in SL-6 contributes 0.003 g/L in SL-4. |
| Distilled water | 900.0 ML_PER_L | TOGO M860 / JCM Medium 825 lists 900.0 ml/L direct distilled water before adding 100.0 ml/L Trace element solution SL-6. |
TOGO M860 / JCM Medium 825 adds 10.0 ml/L Trace element solution SL-4. The inline stock composition expands the SL-6 trace-element stock that SL-4 contains.
Trace vitamins
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Biotin | 2.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 2.0 mg/L Biotin. |
| Folic acid | 2.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 2.0 mg/L Folic acid. |
| Pyridoxine hydrochloride | 10.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 10.0 mg/L Pyridoxine hydrochloride. |
| Thiamine HCl | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L Thiamine HCl. |
| Riboflavin | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L Riboflavin. |
| Nicotinic acid | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L Nicotinic acid. |
| Calcium pantothenate | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L Calcium pantothenate. |
| Vitamin B12 | 0.1 MG_PER_L | TOGO M860 / JCM Medium 825 lists 0.1 mg/L Vitamin B12. |
| p-Aminobenzoic acid | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L p-Aminobenzoic acid. |
| Lipoic acid | 5.0 MG_PER_L | TOGO M860 / JCM Medium 825 lists 5.0 mg/L Lipoic acid. |
| Distilled water | 1000.0 ML_PER_L | TOGO M860 / JCM Medium 825 lists 1000.0 ml/L Distilled water. |
TOGO M860 / JCM Medium 825 adds 10.0 ml/L Trace vitamins from JCM Medium 197.
8% NaHCO3 solution
Dose: 1.25 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| NaHCO3 | 80.0 G_PER_L | TOGO M860 / JCM Medium 825 lists 80.0 g/L NaHCO3. |
TOGO M860 / JCM Medium 825 adds 1.25 ml/L sterile anaerobic 8% NaHCO3 stock.
10% Glucose solution
Dose: 50.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Glucose | 100.0 G_PER_L | TOGO M860 / JCM Medium 825 lists 100.0 g/L Glucose. |
TOGO M860 / JCM Medium 825 adds 50.0 ml/L sterile anaerobic 10% glucose stock.
3% Na2S x 9 H2O solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| Na2S x 9 H2O | 30.0 G_PER_L | TOGO M860 / JCM Medium 825 lists 30.0 g/L Na2S x 9 H2O. |
TOGO M860 / JCM Medium 825 adds 10.0 ml/L sterile anaerobic 3% Na2S x 9 H2O stock.
3% L-Cysteine HCl x H2O solution
Dose: 10.0 ML_PER_L
| Ingredient | Concentration | Notes |
|---|---|---|
| L-Cysteine HCl x H2O | 30.0 G_PER_L | TOGO M860 / JCM Medium 825 lists 30.0 g/L L-Cysteine HCl x H2O. |
TOGO M860 / JCM Medium 825 adds 10.0 ml/L sterile anaerobic 3% L-cysteine HCl x H2O stock.
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.850524Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M860 |
| 2026-01-28T19:48:28.070620Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: N2 |
| 2026-03-09T08:04:46.467512+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 6 solution(s) from ingredients |
| 2026-03-13T06:20:12.625407Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010277 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name; Added default solution name; Added default solution name; Added default solution name; Added default solution name; Added default solution name |
| 2026-03-17T06:30:24.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:31.572145+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "KOKO Medium" to "koko_medium" for consistent matching |
| 2026-05-16T09:03:21.484461+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:45.117760+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 4 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T06:57:33.536608+00:00 | mgso4-heptahydrate-term-fix-v1.0 | Corrected MgSO4·7H2O primary term grounding to heptahydrate | Re-grounded 1 heptahydrate-labelled ingredient(s) from CHEBI:32599 (generic magnesium sulfate) to CHEBI:31795 (magnesium sulfate heptahydrate). Generic/hexahydrate labels untouched. |
| 2026-06-10T07:46:51.855326+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-11T00:00:00-07:00 | repair_togo_m860_koko_score15.py | RESOLVED_TOGO_M860_KOKO_MEDIUM | Corrected water from 930 g/L to 930.0 ml/L, corrected resazurin from 0.5 g/L to 0.5 mg/L, converted the empty stock-solution placeholders to ml/L stock additions with inline compositions, added pH 7.0 from MediaDive J825, and linked the MediaDive J825 source duplicate. |