Overview
- External ontology
- TOGO:M887 — m TGE-GP Medium
- Applications
-
- Microbial cultivation
- Notes
- Source: https://togomedium.org/medium/M887 Original source: JCM - JCM_M851 Original URL: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=851
Composition
flowchart LR
CultureMech_010305["m_tge_gp_medium"]
ing0_glycerol["glycerol"]
CultureMech_010305 --> ing0_glycerol
CHEBI_17754["CHEBI:17754"]
ing0_glycerol -.-> CHEBI_17754
ing1_KH2PO4["KH2PO4"]
CultureMech_010305 --> ing1_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing1_KH2PO4 -.-> CHEBI_63036
Ingredients (2)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
glycerol
C3H8O3 92.094 g/mol
|
5 G_PER_L |
CHEBI:17754
glycerol
|
Role: Carbon source; Properties: Defined component, Organic compound, Simple component |
| 2 |
KH2PO4
H2O4P.K 136.084 g/mol
|
variable VARIABLE |
CHEBI:63036
potassium dihydrogen phosphate
|
Role: Buffer; Properties: Defined component, Inorganic compound, Simple component |
Solutions
m TGE BROTH MEDIUM (see Medium [M828])
Dose: 1 G_PER_L
Cross-reference to Medium M828
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T06:35:55.902404Z | togo-import | Imported from TOGO Medium | Source: JCM, ID: M887 |
| 2026-01-28T19:48:15.763935Z | chebi-enrichment | Added CHEBI ontology terms to ingredients | Enriched using MicrobeMediaParam and MediaDive chemical mappings |
| 2026-02-03T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: KH2PO4 |
| 2026-03-09T08:04:25.972321+00:00 | solution-migrator-v1.0 | Migrated solutions from ingredients to solutions array | Moved 1 solution(s) from ingredients |
| 2026-03-13T06:20:12.854490Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:010305 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default solution name |
| 2026-03-17T06:29:58.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:31.802213+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "m TGE-GP Medium" to "m_tge_gp_medium" for consistent matching |
| 2026-05-16T09:03:21.742324+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=2 |
| 2026-06-05T07:40:45.379898+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 2 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:35.120783+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:46:51.950211+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |