agrobactin
naturalproductmech:mibig-bb581c6679 MINTED SEEDED
Structure
| Standard InChIKey | BWPMKVHHFNGYEN-CJAUYULYSA-N |
|---|---|
| SMILES | C[C@@H]1[C@H](N=C(O1)C2=C(C(=CC=C2)O)O)C(=O)N(CCCCNC(=O)C3=C(C(=CC=C3)O)O)CCCNC(=O)C4=C(C(=CC=C4)O)O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA018820 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Agrobacterium tumefaciens NCBITaxon:358 |
BGC_CHARACTERIZED | mibig:BGC0002474 | PMID:12207035 |
Occurrences 4
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Rhizobium radiobacter NCBITaxon:362 |
LOTUS | DOI:10.1021/JA00546A014 |
| Rhizobium radiobacter NCBITaxon:362 |
LOTUS | DOI:10.1266/GGS.77.137 |
| Agrobacterium tumefaciens NCBITaxon:358 |
LOTUS | DOI:10.1021/JA00546A014 |
| Agrobacterium tumefaciens NCBITaxon:358 |
LOTUS | DOI:10.1266/GGS.77.137 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002474 | Agrobacterium tumefaciens NCBITaxon:358 |
CLUSTER_DEMONSTRATED | genbank:AB083344.2 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002474 | MIBIG | 2 |
This page is generated from data/natural_products/alkaloids/agrobactin.yaml, which is generated from the committed inventories. Neither is edited by hand.