altemicidin
naturalproductmech:mibig-a58ee03ee4 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | VZRFZUPFQKSXPV-VPFIQFBESA-N |
|---|---|
| SMILES | CN1C[C@@H]2[C@@H](C[C@@H]([C@]2(C(=O)O)NC(=O)CS(=O)(=O)N)O)C(=C1)C(=O)N |
| Stereochemistry | fully defined |
| Cross-references | pubchem:11036174 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. NCBITaxon:1931 |
SOURCE_ASSERTION | mibig:BGC0001925 | PMID:30643149 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces sioyaensis NCBITaxon:67364 |
LOTUS | DOI:10.7164/ANTIBIOTICS.42.1556 |
| Streptomyces sioyaensis NCBITaxon:67364 |
LOTUS | DOI:10.7164/ANTIBIOTICS.42.1562 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001925 | Streptomyces sp. NCBITaxon:1931 |
CLUSTER_UNSTATED | genbank:LC420052.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Causal graph — biosynthesis 6 nodes, 5 edges
Database-annotated early scaffold formation by native SbzP/Q from Streptomyces sp. NCIMB 40513. Intermediate numbers follow UniProt annotations. This partial schematic omits cofactors/byproducts as nodes; it is not a balanced reaction or a full pathway reconstitution.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| NAD(+) | is_annotated_substrate_of | SbzP (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY52/entry |
|
| S-adenosyl-L-methionine | is_annotated_substrate_of | SbzP (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY52/entry
|
|
| SbzP (NCIMB 40513 native reference) | is_annotated_to_produce | Altemicidin intermediate 1 (UniProt annotation) | https://www.uniprot.org/uniprotkb/P0DY52/entry
|
|
| Altemicidin intermediate 1 (UniProt annotation) | is_annotated_substrate_of | SbzQ (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY53/entry |
|
| SbzQ (NCIMB 40513 native reference) | is_annotated_to_produce | Altemicidin intermediate 2 (UniProt annotation) | https://www.uniprot.org/uniprotkb/P0DY53/entry
|
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 11 nodes, 10 edges
Database-annotated sulfamoyl precursor synthesis, carrier loading and transfer in altemicidin biosynthesis. SbzG and SbzK nodes denote native carrier references, not stand-alone enzymes or permanently acylated proteins. Carrier loading includes in-vitro database annotations. Only SbzG donor use is drawn for SbzI; the probable SbzK handoff is not asserted. No stable complex, stoichiometry or in-vivo carrier interchangeability is claimed.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| L-Cysteine | is_annotated_substrate_of | SbzM (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY49/entry |
|
| SbzM (NCIMB 40513 native reference) | is_annotated_to_produce | 2-Oxoethane-1-sulfonamide | https://www.uniprot.org/uniprotkb/P0DY49/entry
|
|
| 2-Oxoethane-1-sulfonamide | is_annotated_substrate_of | SbzJ (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY46/entry |
|
| SbzJ (NCIMB 40513 native reference) | is_annotated_to_produce | 2-Sulfamoylacetate | https://www.uniprot.org/uniprotkb/P0DY46/entry
|
|
| 2-Sulfamoylacetate | is_annotated_substrate_of | SbzL (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY48/entry |
|
| SbzL (NCIMB 40513 native reference) | is_annotated_to_load_2_sulfamoylacetate_onto | SbzG (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY48/entry |
|
| SbzL (NCIMB 40513 native reference) | is_annotated_to_load_2_sulfamoylacetate_onto | SbzK (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY48/entry |
|
| SbzG (NCIMB 40513 native reference) | is_annotated_acyl_donor_carrier_for | SbzI (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY36/entry |
|
| Altemicidin intermediate 2 (UniProt annotation) | is_annotated_substrate_of | SbzI (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY45/entry
|
|
| SbzI (NCIMB 40513 native reference) | is_annotated_to_produce | Altemicidin intermediate 3 (UniProt annotation) | https://www.uniprot.org/uniprotkb/P0DY45/entry
|
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 5 nodes, 4 edges
Database-annotated late reduction and N-methylation yielding the altemicidin scaffold. No edge connects intermediate 3 to didehydrodemethylaltemicidin: the intervening chemistry is unresolved in the adopted evidence. The owner denotes the neutral compound; this schematic does not assert a balanced, protonation-specific Rhea reaction.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| Didehydrodemethylaltemicidin | is_annotated_substrate_of | SbzF (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY35/entry |
|
| SbzF (NCIMB 40513 native reference) | is_annotated_to_produce | Demethylaltemicidin | https://www.uniprot.org/uniprotkb/P0DY35/entry
|
|
| Demethylaltemicidin | is_annotated_substrate_of | SbzE (NCIMB 40513 native reference) | https://www.uniprot.org/uniprotkb/P0DY34/entry |
|
| SbzE (NCIMB 40513 native reference) | is_annotated_to_produce | Altemicidin | https://www.uniprot.org/uniprotkb/P0DY34/entry
|
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 5 nodes, 4 edges
Database-annotated participation of native SbzH/N/O in altemicidin biosynthesis, without an individual catalytic assignment, fixed reaction order or complex claim. The process node is not a protein complex and does not fill the unresolved intermediate-3-to-late-tailoring connection.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| SbzH (NCIMB 40513 native reference) | is_annotated_participant_in | Altemicidin biosynthesis (annotated participation) | https://www.uniprot.org/uniprotkb/P0DY37/entry |
|
| SbzN (NCIMB 40513 native reference) | is_annotated_participant_in | Altemicidin biosynthesis (annotated participation) | https://www.uniprot.org/uniprotkb/P0DY50/entry |
|
| SbzO (NCIMB 40513 native reference) | is_annotated_participant_in | Altemicidin biosynthesis (annotated participation) | https://www.uniprot.org/uniprotkb/P0DY51/entry |
|
| Altemicidin biosynthesis (annotated participation) | is_annotated_pathway_for | Altemicidin | https://www.uniprot.org/uniprotkb/P0DY37/entry |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Explore across X-Mech
Open questions 1
curator-altemicidin-sbz-evidence-boundaries — Which primary experimental constructs and intervening steps can be independently verified for the altemicidin Sbz pathway?
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001925 | MIBIG | 4 |
This page is generated from data/natural_products/alkaloids/altemicidin.yaml, which is generated from the committed inventories. Neither is edited by hand.