petrobactin
naturalproductmech:mibig-db400f9f02 MINTED SEEDED
Structure
| Standard InChIKey | GKIMOVAPSAVJHZ-UHFFFAOYSA-N |
|---|---|
| SMILES | OC(=O)C(O)(CC(=O)NCCCCNCCCNC(=O)C1=CC=C(O)C(O)=C1)CC(=O)NCCCCNCCCNC(=O)C1=CC=C(O)C(O)=C1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA010109 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Bacillus anthracis str. Ames NCBITaxon:198094 |
SOURCE_ASSERTION | mibig:BGC0000942 | PMID:14756782 |
Occurrences 5
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Bacillus anthracis NCBITaxon:1392 |
LOTUS | DOI:10.1021/JO800427F |
| Bacillus anthracis NCBITaxon:1392 |
LOTUS | DOI:10.1046/J.1365-2958.2003.03861.X |
| Marinobacter hydrocarbonoclasticus NCBITaxon:2743 |
LOTUS | DOI:10.1021/JA0119088 |
| Marinobacter hydrocarbonoclasticus NCBITaxon:2743 |
LOTUS | DOI:10.1021/JO049803L |
| Marinobacter hydrocarbonoclasticus NCBITaxon:2743 |
LOTUS | DOI:10.1021/NP049823I |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000942 | Bacillus anthracis str. Ames NCBITaxon:198094 |
CLUSTER_DEMONSTRATED | genbank:AE016879.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000942 | MIBIG | 4 |
This page is generated from data/natural_products/alkaloids/petrobactin.yaml, which is generated from the committed inventories. Neither is edited by hand.