photobactin
naturalproductmech:mibig-0b0a404b69 MINTED SEEDED
Structure
| Standard InChIKey | TZYHZQRDONBPTB-UHFFFAOYSA-N |
|---|---|
| SMILES | CC1C(N=C(O1)C2=C(C(=CC=C2)O)O)C(=O)NCCCCNC(=O)C3=C(C(=CC=C3)O)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA014343 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Photorhabdus luminescens NCBITaxon:29488 |
SOURCE_ASSERTION | mibig:BGC0002495 | PMID:12902261 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Photorhabdus luminescens NCBITaxon:29488 |
LOTUS | DOI:10.1128/AEM.69.8.4706-4713.2003 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002495 | Photorhabdus luminescens NCBITaxon:29488 |
CLUSTER_UNSTATED | genbank:AY042783.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002495 | MIBIG | 2 |
This page is generated from data/natural_products/alkaloids/photobactin.yaml, which is generated from the committed inventories. Neither is edited by hand.