rubradirin
naturalproductmech:mibig-55457a1611 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | HZJYMSYXRSCXPH-GZTJUZNOSA-N |
|---|---|
| SMILES | CC1/C=C(/C(=O)C2=C3C(=CC(=C2O)C)C(=O)C4=C(C3=O)OC(CN4)(C(=O)C(C1OC(=O)C5=C(C(=CC(=N5)C(=O)NC6=C(OC7=C(C6=O)C=CC(=C7)OC)O)OC8CC(C(C(O8)C)OC)(C)[N+](=O)[O-])O)O)C)\C |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:5459344 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces achromogenes subsp. rubradiris NCBITaxon:285531 |
SOURCE_ASSERTION | mibig:BGC0000141 | PMID:9387157 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000141 | Streptomyces achromogenes subsp. rubradiris NCBITaxon:285531 |
CLUSTER_DEMONSTRATED | genbank:AJ871581.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000141 | MIBIG | 5 |
This page is generated from data/natural_products/alkaloids/rubradirin.yaml, which is generated from the committed inventories. Neither is edited by hand.