secimide
naturalproductmech:mibig-f774fd47d3 MINTED SEEDED
Structure
| Standard InChIKey | CUHWACVSFBFFSP-AYTXJLRPSA-N |
|---|---|
| SMILES | COC(=O)/C(C)=C/C(C)C(=O)C[C@H](O)CC1CC(=O)NC(=O)C1 |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA033159 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas syringae pv. syringae B728a NCBITaxon:205918 |
BGC_CHARACTERIZED | mibig:BGC0002060 | PMID:33658492 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1038/S41467-021-21163-X |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002060 | Pseudomonas syringae pv. syringae B728a NCBITaxon:205918 |
CLUSTER_DEMONSTRATED | genbank:CP000075.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002060 | MIBIG | 3 |
This page is generated from data/natural_products/alkaloids/secimide.yaml, which is generated from the committed inventories. Neither is edited by hand.