yersiniabactin
naturalproductmech:mibig-5395461679 MINTED SEEDED
Structure
| Standard InChIKey | JHYVWAMMAMCUIR-UHFFFAOYSA-N |
|---|---|
| SMILES | CC1(CSC(=N1)C(C)(C)C(C2CSC(N2)C3CSC(=N3)C4=CC=CC=C4O)O)C(=O)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA015861, pubchem:5462519 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas syringae pv. tomato str. DC3000 NCBITaxon:223283 |
BGC_CHARACTERIZED | mibig:BGC0002570 | PMID:17660289 |
| Yersinia enterocolitica NCBITaxon:630 |
SOURCE_ASSERTION | mibig:BGC0000467 | PMID:9457855 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Yersinia enterocolitica NCBITaxon:630 |
LOTUS | DOI:10.1128/JB.180.3.538-546.1998 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002570 | Pseudomonas syringae pv. tomato str. DC3000 NCBITaxon:223283 |
CLUSTER_DEMONSTRATED | genbank:AE016853.1 |
| mibig:BGC0000467 | Yersinia enterocolitica NCBITaxon:630 |
CLUSTER_UNSTATED | genbank:Y12527.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0000467, BGC0002570. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002570 | MIBIG | 2 |
| BGC0000467 | MIBIG | 5 |
This page is generated from data/natural_products/alkaloids/yersiniabactin.yaml, which is generated from the committed inventories. Neither is edited by hand.