aerobactin
CHEBI:18157 EXACT SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | KDHHWXGBNUCREU-HOTGVXAUSA-N |
|---|---|
| SMILES | CC(=O)N(CCCC[C@@H](C(=O)O)NC(=O)CC(CC(=O)N[C@@H](CCCCN(C(=O)C)O)C(=O)O)(C(=O)O)O)O |
| Stereochemistry | fully defined |
| Cross-references | pubchem:123762 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.
Producer organisms 3
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Grimontia hollisae NCBITaxon:673 |
SOURCE_ASSERTION | mibig:BGC0000939 | PMID:16809025 |
| Xenorhabdus szentirmaii DSM 16338 NCBITaxon:1427518 |
SOURCE_ASSERTION | mibig:BGC0001498 | PMID:28654175 |
| Pantoea ananatis NCBITaxon:553 |
SOURCE_ASSERTION | mibig:BGC0001499 | PMID:30027301 |
Occurrences 5
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces wadayamensis NCBITaxon:141454 |
LOTUS | DOI:10.1128/GENOMEA.00625-14 |
| Streptomyces nodosus NCBITaxon:40318 |
LOTUS | DOI:10.1007/S00253-015-7060-9 |
| Escherichia coli NCBITaxon:562 |
LOTUS | DOI:10.1038/MSB.2011.65 |
| Escherichia coli NCBITaxon:562 |
CHEBI | PMID:21988831 |
| Pantoea ananatis NCBITaxon:553 |
LOTUS | DOI:10.1007/S00438-018-1477-7 |
Biosynthetic gene clusters 3
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000939 | Grimontia hollisae NCBITaxon:673 |
CLUSTER_UNSTATED | genbank:AB199785.1 |
| mibig:BGC0001498 | Xenorhabdus szentirmaii DSM 16338 NCBITaxon:1427518 |
CLUSTER_UNSTATED | genbank:CBXF010000089.1 |
| mibig:BGC0001499 | Pantoea ananatis NCBITaxon:553 |
CLUSTER_UNSTATED | genbank:MH015021.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Explore across X-Mech
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0000939, BGC0001498, BGC0001499. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000939 | MIBIG | 5 |
| BGC0001498 | MIBIG | 5 |
| BGC0001499 | MIBIG | 5 |
| CHEBI:18157 | CHEBI | 3-star |
This page is generated from data/natural_products/amino_acids_and_peptides/aerobactin.yaml, which is generated from the committed inventories. Neither is edited by hand.