albomycin δ1
CHEBI:83206 EXACT SEEDED antibacterial
An iron(III) hydroxamate in which desferrialbomycin δ1(3−) is complexed to iron(III).
Structure
| Standard InChIKey | KKRRFZFRCNSVCL-DFBZBFILSA-N |
|---|---|
| SMILES | CC(=O)N1CCC[C@H](N)C(=O)N[C@H]2CCCN(O[Fe](O1)ON(CCC[C@H](NC2=O)C(=O)N[C@@H](CO)C(=O)N[C@H]([C@H](O)[C@H]1S[C@H]([C@H](O)[C@H]1O)n1ccc(=O)n(C)c1=O)C(O)=O)C(C)=O)C(C)=O |
| Stereochemistry | fully defined |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. ATCC 700974 NCBITaxon:668825 |
BGC_CHARACTERIZED | mibig:BGC0002300 | PMID:22704654 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002300 | Streptomyces sp. ATCC 700974 NCBITaxon:668825 |
CLUSTER_DEMONSTRATED | genbank:JN252488.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Elsewhere in the fleet
- AntibioticMech — CHEBI:83206 (same structure, same inchikey)
Open questions 1
name-disagreement — ChEBI calls this structure 'albomycin δ1' and MIBiG calls it 'albomycin delta1'. They share a Standard InChIKey, so if the names denote different compounds then one upstream record has the wrong structure. Check which.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002300 | MIBIG | 2 |
| CHEBI:83206 | CHEBI | 3-star |
This page is generated from data/natural_products/amino_acids_and_peptides/albomycin-1.yaml, which is generated from the committed inventories. Neither is edited by hand.