cyclomarin D
naturalproductmech:mibig-aa08bbbeb2 MINTED SEEDED
Structure
| Standard InChIKey | AHDUXXXZGSWYHF-IXGGKXOYSA-N |
|---|---|
| SMILES | CO[C@@H]([C@@H]1NC(=O)[C@H](C)NC(=O)[C@H](C[C@@H](C)CO)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)N(C)C(=O)[C@@H](NC1=O)C(C)C)[C@H](C)C=C(C)C)[C@H](O)C1=CN(C2=C1C=CC=C2)C(C)(C)C=C)C1=CC=CC=C1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA011889, pubchem:25220882 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Salinispora arenicola CNS-205 NCBITaxon:391037 |
BGC_CHARACTERIZED | mibig:BGC0000333 | PMID:18331040 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Salinispora arenicola NCBITaxon:168697 |
LOTUS | DOI:10.1021/JA711188X |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000333 | Salinispora arenicola CNS-205 NCBITaxon:391037 |
CLUSTER_DEMONSTRATED | genbank:CP000850.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000333 | MIBIG | 5 |
This page is generated from data/natural_products/amino_acids_and_peptides/cyclomarin-d.yaml, which is generated from the committed inventories. Neither is edited by hand.