frankobactin B3
naturalproductmech:mibig-d8d603f628 MINTED SEEDED
Structure
| Standard InChIKey | FODDHTHRAYJPCC-OUBBJWQNSA-N |
|---|---|
| SMILES | C[C@@H](O)[C@@H](NC(=O)CNC(=O)[C@H](CO)NC(=O)C1=CC=CC=C1O)C(=O)N(C)[C@@H](CCCNO)C(=O)N[C@@H](CCCN)C(=O)N[C@@H](CCCN(O)C=O)C(=O)O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA033074 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Frankia sp. CH37 NCBITaxon:683308 |
SOURCE_ASSERTION | mibig:BGC0002409 | PMID:33789052 |
| Frankia sp. CH37 NCBITaxon:683308 |
SOURCE_ASSERTION | mibig:BGC0002410 | PMID:33789052 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Frankia NCBITaxon:1854 |
LOTUS | DOI:10.1021/ACS.JNATPROD.0C01291 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002409 | Frankia sp. CH37 NCBITaxon:683308 |
CLUSTER_UNSTATED | genbank:JADBID010000001.1 |
| mibig:BGC0002410 | Frankia sp. CH37 NCBITaxon:683308 |
CLUSTER_UNSTATED | genbank:JADBID010000001.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0002409, BGC0002410. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002409 | MIBIG | 3 |
| BGC0002410 | MIBIG | 3 |
This page is generated from data/natural_products/amino_acids_and_peptides/frankobactin-b3.yaml, which is generated from the committed inventories. Neither is edited by hand.