pacidamycin 1
naturalproductmech:mibig-b7d861f3c0 MINTED SEEDED
Structure
| Standard InChIKey | PCVKUJRMSUSDPH-DLJJVGNLSA-N |
|---|---|
| SMILES | O[C@@H]([C@H](N1C(NC(C=C1)=O)=O)O/2)CC2=C\NC([C@@H](NC([C@H](C)NC(N[C@@H](CC3=CNC4=C3C=CC=C4)C(O)=O)=O)=O)[C@@H](N(C)C([C@H](CC5=CC=CC(O)=C5)NC([C@@H](N)C)=O)=O)C)=O |
| Stereochemistry | fully defined |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces coeruleorubidus NCBITaxon:116188 |
SOURCE_ASSERTION | mibig:BGC0000951 | PMID:20826445 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces coeruleorubidus NCBITaxon:116188 |
LOTUS | DOI:10.7164/ANTIBIOTICS.42.506 |
| Streptomyces coeruleorubidus NCBITaxon:116188 |
LOTUS | DOI:10.7164/ANTIBIOTICS.42.512 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000951 | Streptomyces coeruleorubidus NCBITaxon:116188 |
CLUSTER_UNSTATED | genbank:HM855229.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000951 | MIBIG | 5 |
This page is generated from data/natural_products/amino_acids_and_peptides/pacidamycin-1.yaml, which is generated from the committed inventories. Neither is edited by hand.