pacifibactin
naturalproductmech:mibig-551270042f MINTED SEEDED
Structure
| Standard InChIKey | DRKCOUTVBQFDMD-XRTXDQJLSA-N |
|---|---|
| SMILES | CC(C(CC(=O)N[C@@H]([C@@H](C(=O)O)O)C(=O)N[C@H](CCCCN=C(N)N)C(=O)N[C@H]([C@H](C(=O)O)O)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCN(C(=O)C)O)C(=O)N[C@@H]1CCCN(C1=O)O)O)N |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA025052 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Alcanivorax pacificus W11-5 NCBITaxon:391936 |
SOURCE_ASSERTION | mibig:BGC0002418 | PMID:23209202 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Alcanivorax pacificus NCBITaxon:1306787 |
LOTUS | DOI:10.1021/ACS.JNATPROD.8B01073 |
| Alcanivorax pacificus NCBITaxon:1306787 |
LOTUS | DOI:10.1128/JB.01845-12 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002418 | Alcanivorax pacificus W11-5 NCBITaxon:391936 |
CLUSTER_UNSTATED | genbank:CP004387.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002418 | MIBIG | 2 |
This page is generated from data/natural_products/amino_acids_and_peptides/pacifibactin.yaml, which is generated from the committed inventories. Neither is edited by hand.