syringafactin C
naturalproductmech:mibig-fa248dbc45 MINTED SEEDED
Structure
| Standard InChIKey | VSIGABYNCNXUIU-UHFFFAOYSA-N |
|---|---|
| SMILES | CCCCCCCC(O)CC(=O)NC(CC(C)C)C(=O)NC(CC(C)C)C(=O)NC(CCC(N)=O)C(=O)NC(CC(C)C)C(=O)NC(C(=O)NC(C(=O)NC(CC(C)C)C(=O)NC(CC(C)C)C(=O)O)C(C)CC)C(C)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA032806 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas sp. SZ57 NCBITaxon:2662259 |
BGC_CHARACTERIZED | mibig:BGC0002518 | PMID:3526668 |
| Pseudomonas syringae pv. tomato str. DC3000 NCBITaxon:223283 |
SOURCE_ASSERTION | mibig:BGC0000435 | PMID:17601782 |
Occurrences 0
None cited.
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002518 | Pseudomonas sp. SZ57 NCBITaxon:2662259 |
CLUSTER_DEMONSTRATED | genbank:WIBD01000002.1 |
| mibig:BGC0000435 | Pseudomonas syringae pv. tomato str. DC3000 NCBITaxon:223283 |
CLUSTER_UNSTATED | genbank:AE016853.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0000435, BGC0002518. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002518 | MIBIG | 3 |
| BGC0000435 | MIBIG | 5 |
This page is generated from data/natural_products/amino_acids_and_peptides/syringafactin-c.yaml, which is generated from the committed inventories. Neither is edited by hand.