syringolin A
naturalproductmech:mibig-c7bbb49a1e MINTED SEEDED
Structure
| Standard InChIKey | RUWSLQOIGKYPEZ-MNAJIYKBSA-N |
|---|---|
| SMILES | CC(C)C(NC(=O)NC(C(C)C)C(=O)NC1\C=C/CCNC(=O)\C=C/C(NC1=O)C(C)C)C(O)=O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA010377, pubchem:24978526 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Rhizobium sp. AP16 NCBITaxon:1144306 |
SOURCE_ASSERTION | mibig:BGC0000436 | PMID:24727275 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pseudomonas NCBITaxon:286 |
LOTUS | DOI:10.1094/MPMI.1998.11.8.727 |
| Rhizobium NCBITaxon:379 |
LOTUS | DOI:10.1128/AEM.00395-14 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000436 | Rhizobium sp. AP16 NCBITaxon:1144306 |
CLUSTER_UNSTATED | genbank:AJVM01000074.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000436 | MIBIG | 5 |
This page is generated from data/natural_products/amino_acids_and_peptides/syringolin-a-2.yaml, which is generated from the committed inventories. Neither is edited by hand.