teicoplanin A2-3
CHEBI:34996 EXACT SEEDED antimicrobial unspecified
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
A teicoplanin A2 that has decanoyl as the variable N-acyl group.
Structure
| Standard InChIKey | BJNLLBUOHPVGFT-PKMGYIMSSA-N |
|---|---|
| SMILES | CCCCCCCCCC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC2=C3C=C4C=C2OC5=C(C=C(C=C5)[C@H]([C@H]6C(=O)N[C@@H](C7=CC(=CC(=C7C8=C(C=CC(=C8)[C@H](C(=O)N6)NC(=O)[C@@H]4NC(=O)[C@@H]9C1=CC(=CC(=C1)O)OC1=C(C=CC(=C1)[C@H](C(=O)N[C@H](CC1=CC(=C(O3)C=C1)Cl)C(=O)N9)N)O)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O)C(=O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C)Cl)CO)O)O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA020142 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Actinoplanes teichomyceticus NCBITaxon:1867 |
SOURCE_ASSERTION | mibig:BGC0000440 | DOI:10.1016/0195-6701(86)90011-3 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Actinoplanes teichomyceticus NCBITaxon:1867 |
LOTUS | DOI:10.1021/JA00329A044 |
| Actinoplanes teichomyceticus NCBITaxon:1867 |
CHEBI | PMID:2977757 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000440 | Actinoplanes teichomyceticus NCBITaxon:1867 |
CLUSTER_DEMONSTRATED | genbank:AJ605139.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Biosynthesis curated
Written by a curator with claim-level evidence on each step; not derived from a source. This is what the rest of the record exists to support.
| Step | Enzyme | Reaction | Substrate → product | Evidence |
|---|---|---|---|---|
| 1 | GtfB teicoplanin aglycone glycosyltransferase UniProtKB:Q6ZZI3 |
ungrounded → ungrounded | DOI:10.1099/mic.0.26507-0 | |
| 2 | GtfA teicoplanin Bht6 glycosyltransferase UniProtKB:Q6ZZJ7 |
ungrounded → ungrounded | DOI:10.1099/mic.0.26507-0 | |
| 3 | Orf2* teicoplanin Hpg4 N-acetylglucosaminyl deacetylase UniProtKB:Q6ZZJ1 |
ungrounded → ungrounded | DOI:10.1021/ja0644834 | |
| 4 | Tcp24 teicoplanin Hpg4 N-acyltransferase UniProtKB:Q70AY4 |
ungrounded → ungrounded | DOI:10.1016/s1074-5521(04)00002-x |
Step 1: GtfB/tcp23 transfers N-acetylglucosamine from UDP-N-acetyl-alpha-D-glucosamine to Hpg4 of the teicoplanin aglycone. That Hpg4 glycosylation precedes downstream deacetylation, acylation and tailoring toward teicoplanin A2-3, so the immediate pseudoaglycone product is left ungrounded.
Step 2: GtfA/tcp8 transfers N-acetylglucosamine from UDP-N-acetyl-alpha-D-glucosamine to Bht6/3-Cl-6betaHty of a GtfB-primed teicoplanin pseudoaglycone. GtfA can also glycosylate the unmodified teicoplanin aglycone less efficiently, but Bht6 glycosylation is ordered here after Hpg4 glycosylation toward teicoplanin A2-3, so the immediate bis-glycosylated product is left ungrounded.
Step 3: Orf2*/tcp14 deacetylates the Hpg4 N-acetylglucosaminyl group of the teicoplanin pseudoaglycone, exposing the Hpg4 glucosamine for downstream N-acylation toward teicoplanin A2-3.
Step 4: Tcp24/tAtf transfers a fatty acyl group from an acyl-CoA donor to the Orf2*-exposed Hpg4 glucosamine of the teicoplanin pseudoaglycone. The immediate N-acylated bis-glycosylated product is left ungrounded because the record-specific A2 lipid donor is not grounded here.
Mechanism & Biosynthesis Overview
Causal graph — biosynthesis 4 nodes, 3 edges
Actinoplanes teichomyceticus ATCC 31131 GtfB glycosylates Hpg4 of the teicoplanin aglycone with UDP-N-acetyl-alpha-D-glucosamine during teicoplanin A2 pseudoaglycone biosynthesis.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| teicoplanin aglycone | is Hpg4-glycosylated by | GtfB | DOI:10.1099/mic.0.26507-0 |
|
| UDP-N-acetyl-alpha-D-glucosamine | donates N-acetylglucosamine via | GtfB | DOI:10.1099/mic.0.26507-0 |
|
| GtfB | forms | Hpg4 N-acetylglucosaminyl teicoplanin pseudoaglycone | DOI:10.1099/mic.0.26507-0 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 4 nodes, 3 edges
Actinoplanes teichomyceticus ATCC 31131 GtfA glycosylates Bht6 of a GtfB-primed teicoplanin pseudoaglycone with UDP-N-acetyl-alpha-D-glucosamine during teicoplanin A2 pseudoaglycone biosynthesis.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| Hpg4 N-acetylglucosaminyl teicoplanin pseudoaglycone | is Bht6-glycosylated by | GtfA | DOI:10.1099/mic.0.26507-0 |
|
| UDP-N-acetyl-alpha-D-glucosamine | donates N-acetylglucosamine via | GtfA | DOI:10.1099/mic.0.26507-0 |
|
| GtfA | forms | Hpg4/Bht6 bis-N-acetylglucosaminyl teicoplanin pseudoaglycone | DOI:10.1099/mic.0.26507-0 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 3 nodes, 2 edges
Actinoplanes teichomyceticus ATCC 31131 Orf2*/tcp14 deacetylates the Hpg4 N-acetylglucosaminyl group of the bis-glycosylated teicoplanin pseudoaglycone during teicoplanin A2 maturation.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| Hpg4/Bht6 bis-N-acetylglucosaminyl teicoplanin pseudoaglycone | is Hpg4-deacetylated by | Orf2* | DOI:10.1021/ja0644834 |
|
| Orf2* | forms | Hpg4 glucosaminyl/Bht6 N-acetylglucosaminyl teicoplanin pseudoaglycone | DOI:10.1021/ja0644834 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 4 nodes, 3 edges
Actinoplanes teichomyceticus ATCC 31131 Tcp24/tAtf N-acylates the Hpg4 glucosamine of the deacetylated teicoplanin pseudoaglycone during teicoplanin A2 maturation.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| Hpg4 glucosaminyl/Bht6 N-acetylglucosaminyl teicoplanin pseudoaglycone | is Hpg4-N-acylated by | Tcp24 | DOI:10.1016/s1074-5521(04)00002-x |
|
| fatty acyl-CoA donor | donates fatty acyl group via | Tcp24 | DOI:10.1016/s1074-5521(04)00002-x |
|
| Tcp24 | forms | Hpg4 N-acylglucosaminyl/Bht6 N-acetylglucosaminyl teicoplanin pseudoaglycone | DOI:10.1016/s1074-5521(04)00002-x |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Elsewhere in the fleet
- AntibioticMech — CHEBI:34996 (same structure, same inchikey)
Explore across X-Mech
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000440 | MIBIG | 5 |
| CHEBI:34996 | CHEBI | 3-star |
This page is generated from data/natural_products/amino_acids_and_peptides/teicoplanin-a2-3.yaml, which is generated from the committed inventories. Neither is edited by hand.