vicibactin
naturalproductmech:mibig-a0963ff8e6 MINTED SEEDED
Structure
| Standard InChIKey | NEZSNYPOAQRZDV-ZXXBMJRBSA-N |
|---|---|
| SMILES | C[C@@H]1CC(=O)N(O)CCC[C@@H](NC(C)=O)C(=O)O[C@H](C)CC(=O)N(O)CCC[C@@H](NC(C)=O)C(=O)O[C@H](C)CC(=O)N(O)CCC[C@@H](NC(C)=O)C(=O)O1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA0788 |
Filing pathway
Amino acids and peptides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Rhizobium etli CFN 42 NCBITaxon:347834 |
SOURCE_ASSERTION | mibig:BGC0000457 | PMID:16505379 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Rhizobium etli NCBITaxon:29449 |
LOTUS | DOI:10.1073/PNAS.0508502103 |
| Rhizobium leguminosarum NCBITaxon:384 |
LOTUS | DOI:10.1099/00221287-144-3-781 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000457 | Rhizobium etli CFN 42 NCBITaxon:347834 |
CLUSTER_UNSTATED | genbank:CP000138.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000457 | MIBIG | 5 |
This page is generated from data/natural_products/amino_acids_and_peptides/vicibactin.yaml, which is generated from the committed inventories. Neither is edited by hand.