alginate
naturalproductmech:mibig-3d01c83d0e MINTED SEEDED
Structure
| Standard InChIKey | SMBZBFKIKPIHRX-SKDOGWRHSA-M |
|---|---|
| SMILES | [C@@H]1([C@@H]([C@H](OC([C@H]1O)O)C(=O)O)O)O.C(=O)[C@H]([C@H]([C@@H]([C@H](C(=O)[O-])O)O)O)O.OC1O[C@@H]([C@H]([C@@H]([C@@H]1OC(C)=O)OC(C)=O)O)C(O)=O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:25202446, pubchem:131704328 |
Filing pathway
Carbohydrates — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is saccharide, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas aeruginosa PAO1 NCBITaxon:208964 |
SOURCE_ASSERTION | mibig:BGC0000725 | PMID:7686997 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000725 | Pseudomonas aeruginosa PAO1 NCBITaxon:208964 |
CLUSTER_UNSTATED | genbank:AE004091.2 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000725 | MIBIG | 5 |
This page is generated from data/natural_products/carbohydrates/alginate.yaml, which is generated from the committed inventories. Neither is edited by hand.