gentamicin
naturalproductmech:mibig-b697ac65fb MINTED SEEDED
Structure
| Standard InChIKey | HFLKNINDVFJPQT-UHFFFAOYSA-N |
|---|---|
| SMILES | CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CO)O)O)N)N)N)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
Filing pathway
Carbohydrates — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is saccharide, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Micromonospora echinospora NCBITaxon:1877 |
SOURCE_ASSERTION | mibig:BGC0001603 | PMID:25641167 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001603 | Micromonospora echinospora NCBITaxon:1877 |
CLUSTER_UNSTATED | genbank:KY971520.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001603 | MIBIG | 3 |
This page is generated from data/natural_products/carbohydrates/gentamicin-2.yaml, which is generated from the committed inventories. Neither is edited by hand.