protegencin
naturalproductmech:mibig-f2b4cdecaa MINTED SEEDED
Structure
| Standard InChIKey | AMCJPHJAMUEWRC-UHFFFAOYSA-N |
|---|---|
| SMILES | C#CC#CC#CC#CC=CCCCCCCCC(=O)O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA033161 |
Filing pathway
Fatty acids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas protegens CHA0 NCBITaxon:1124983 |
BGC_CHARACTERIZED | mibig:BGC0002804 | DOI:10.1073/pnas.2107695118 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002804 | Pseudomonas protegens CHA0 NCBITaxon:1124983 |
CLUSTER_DEMONSTRATED | genbank:LS999205.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002804 | MIBIG | 2 |
This page is generated from data/natural_products/fatty_acids/protegencin.yaml, which is generated from the committed inventories. Neither is edited by hand.