borrelidin
naturalproductmech:mibig-af79f8ac64 MINTED SEEDED
Structure
| Standard InChIKey | OJCKRNPLOZHAOU-UGKRXNSESA-N |
|---|---|
| SMILES | [H][C@]1(CCC[C@H]1C(O)=O)[C@]1([H])C\C=C\C=C(C#N)/[C@H](O)[C@@H](C)C[C@H](C)C[C@H](C)C[C@H](C)[C@@H](O)CC(=O)O1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA011087 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces parvulus NCBITaxon:146923 |
BGC_CHARACTERIZED | mibig:BGC0000031 | PMID:15112998 |
| Streptomyces rochei NCBITaxon:1928 |
SOURCE_ASSERTION | mibig:BGC0001533 | PMID:27451447 |
Occurrences 9
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces coelicoflavus NCBITaxon:285562 |
LOTUS | DOI:10.3389/FMICB.2016.00659 |
| Streptomyces albovinaceus NCBITaxon:66867 |
LOTUS | DOI:10.1128/AAC.27.2.239 |
| Streptomyces mutabilis NCBITaxon:67332 |
LOTUS | DOI:10.1515/ZNC-2017-0140 |
| Streptomyces heilongjiangensis NCBITaxon:945052 |
LOTUS | DOI:10.1099/IJS.0.041483-0 |
| Streptomyces parvulus NCBITaxon:146923 |
LOTUS | DOI:10.1016/J.CHEMBIOL.2003.12.018 |
| Streptomyces parvulus NCBITaxon:146923 |
LOTUS | DOI:10.1111/J.1365-2958.2004.04090.X |
| Streptomyces rochei NCBITaxon:1928 |
LOTUS | DOI:10.1002/HLCA.19670500303 |
| Streptomyces rochei NCBITaxon:1928 |
LOTUS | DOI:10.1007/S00253-018-9237-5 |
| Streptomyces rochei NCBITaxon:1928 |
LOTUS | DOI:10.3389/FMICB.2019.00915 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000031 | Streptomyces parvulus NCBITaxon:146923 |
CLUSTER_DEMONSTRATED | genbank:AJ580915.1 |
| mibig:BGC0001533 | Streptomyces rochei NCBITaxon:1928 |
CLUSTER_UNSTATED | genbank:KT362046.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0000031, BGC0001533. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000031 | MIBIG | 5 |
| BGC0001533 | MIBIG | 5 |
This page is generated from data/natural_products/polyketides/borrelidin.yaml, which is generated from the committed inventories. Neither is edited by hand.