C-1027 chromophore
CHEBI:3252 EXACT SEEDED antimicrobial unspecified
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
An enediyne antibiotic that has formula C43H42ClN3O13. It is a natural product found in Streptomyces globisporus and exhibits antimicrobial and antineoplastic properties.
Structure
| Standard InChIKey | DGGZCXUXASNDAC-QQNGCVSVSA-N |
|---|---|
| SMILES | CC1([C@H]([C@H]([C@H]([C@@H](O1)O[C@]23C=CC=C2C#C/C/4=C\C#C[C@H]3OC5=C(C=C(C=C5Cl)[C@H](CC(=O)OC[C@@H]4OC(=O)C6=CC(=CC7=C6NC(=O)C(=C)O7)OC)N)O)O)O)N(C)C)C |
| Stereochemistry | fully defined |
| Cross-references | pubchem:9962646 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces globisporus C-1027 NCBITaxon:1172567 |
SOURCE_ASSERTION | mibig:BGC0001397 | PMID:26853480 |
Occurrences 11
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces sp. CB02366 NCBITaxon:1703935 |
CHEBI | PMID:29345939 |
| Streptomyces sp. CB00657 NCBITaxon:1718958 |
CHEBI | PMID:29345939 |
| Streptomyces sp. CB02329 NCBITaxon:171897 |
CHEBI | PMID:29345939 |
| Streptomyces sp. CB03608 NCBITaxon:1718988 |
CHEBI | PMID:29345939 |
| Streptomyces globisporus NCBITaxon:1908 |
LOTUS | DOI:10.1016/J.JBIOTEC.2016.02.004 |
| Streptomyces globisporus NCBITaxon:1908 |
LOTUS | DOI:10.1021/NP100825Y |
| Streptomyces globisporus NCBITaxon:1908 |
LOTUS | DOI:10.1107/S0907444993002719 |
| Streptomyces globisporus NCBITaxon:1908 |
LOTUS | DOI:10.1128/JB.00797-12 |
| Streptomyces globisporus NCBITaxon:1908 |
LOTUS | DOI:10.1534/G3.119.400037 |
| Streptomyces globisporus NCBITaxon:1908 |
CHEBI | PMID:21250756 |
| Streptomyces globisporus C-1027 NCBITaxon:1172567 |
CHEBI | PMID:3198491 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001397 | Streptomyces globisporus C-1027 NCBITaxon:1172567 |
CLUSTER_UNSTATED | genbank:CP013739.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Elsewhere in the fleet
- AntibioticMech — CHEBI:3252 (same structure, same inchikey)
Explore across X-Mech
Open questions 1
name-disagreement — ChEBI calls this structure 'C-1027 chromophore' and MIBiG calls it 'lidamycin'. They share a Standard InChIKey, so if the names denote different compounds then one upstream record has the wrong structure. Check which.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001397 | MIBIG | 5 |
| CHEBI:3252 | CHEBI | 3-star |
This page is generated from data/natural_products/polyketides/c-1027-chromophore.yaml, which is generated from the committed inventories. Neither is edited by hand.