clifednamide D
naturalproductmech:mibig-4cd0d81347 MINTED SEEDED
Structure
| Standard InChIKey | MHISYGKJUDXSQZ-ABKVRGIESA-N |
|---|---|
| SMILES | CC(=O)[C@H]1[C@@H]2C=C[C@@H]3[C@@H](C/C=C\C(N)=O)[C@H](/C=C/C(O)=C4C(=O)N[C@@H](CCC(=O)O)C4=O)C[C@@H]3[C@H]2C[C@H]1C |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA029427 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Kitasatospora sp. NCBITaxon:1871188 |
SOURCE_ASSERTION | mibig:BGC0002434 | PMID:32915576 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1021/ACS.JNATPROD.0C00900 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002434 | Kitasatospora sp. NCBITaxon:1871188 |
CLUSTER_DEMONSTRATED | genbank:MT419890.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002434 | MIBIG | 2 |
This page is generated from data/natural_products/polyketides/clifednamide-d.yaml, which is generated from the committed inventories. Neither is edited by hand.