germicidin
naturalproductmech:mibig-79ea2b2bbd MINTED SEEDED
Structure
| Standard InChIKey | NPQKQKITPJTEBK-UHFFFAOYSA-N |
|---|---|
| SMILES | CCC(C)C1=CC(O)=C(CC)C(=O)O1 |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA010967 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces argillaceus NCBITaxon:41951 |
SOURCE_ASSERTION | mibig:BGC0001454 | PMID:29795673 |
Occurrences 11
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces albidoflavus NCBITaxon:1886 |
LOTUS | DOI:10.1007/S00248-014-0508-0 |
| Streptomyces albidoflavus NCBITaxon:1886 |
LOTUS | DOI:10.1007/S10295-013-1383-2 |
| Streptomyces albidoflavus NCBITaxon:1886 |
LOTUS | DOI:10.1021/JA065247W |
| Streptomyces albidoflavus NCBITaxon:1886 |
LOTUS | DOI:10.1038/JA.2011.59 |
| Streptomyces albidoflavus NCBITaxon:1886 |
LOTUS | DOI:10.7164/ANTIBIOTICS.46.1126 |
| Streptomyces coelicolor NCBITaxon:1902 |
LOTUS | DOI:10.1007/S00248-014-0508-0 |
| Streptomyces coelicolor NCBITaxon:1902 |
LOTUS | DOI:10.1007/S10295-013-1383-2 |
| Streptomyces coelicolor NCBITaxon:1902 |
LOTUS | DOI:10.1021/JA065247W |
| Streptomyces coelicolor NCBITaxon:1902 |
LOTUS | DOI:10.1038/JA.2011.59 |
| Streptomyces coelicolor NCBITaxon:1902 |
LOTUS | DOI:10.7164/ANTIBIOTICS.46.1126 |
| Streptomyces argillaceus NCBITaxon:41951 |
LOTUS | DOI:10.1371/JOURNAL.PONE.0198145 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001454 | Streptomyces argillaceus NCBITaxon:41951 |
CLUSTER_UNSTATED | genbank:LT989884.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001454 | MIBIG | 5 |
This page is generated from data/natural_products/polyketides/germicidin.yaml, which is generated from the committed inventories. Neither is edited by hand.