midecamycin
naturalproductmech:mibig-8f1123b739 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | DMUAPQTXSSNEDD-ZZHFWOCQSA-N |
|---|---|
| SMILES | CCC(=O)O[C@@H]1[C@H](O[C@H](C[C@@]1(C)O)O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2N(C)C)O)OC3C(CC(C(/C=C\C=C\CC(OC(=O)CC(C3OC)OC(=O)CC)C)O)C)CC=O)C)C |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:6436158 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces mycarofaciens NCBITaxon:1949 |
SOURCE_ASSERTION | mibig:BGC0000096 | patent:US7070980B2 |
Occurrences 3
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces fradiae NCBITaxon:1906 |
LOTUS | DOI:10.1007/S00253-004-1658-7 |
| Streptomyces mycarofaciens NCBITaxon:1949 |
LOTUS | DOI:10.1111/J.1745-7270.2007.00265.X |
| Streptomyces mycarofaciens NCBITaxon:1949 |
LOTUS | DOI:10.1128/JB.174.15.5141-5144.1992 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000096 | Streptomyces mycarofaciens NCBITaxon:1949 |
CLUSTER_UNSTATED | genbank:BD420675.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000096 | MIBIG | 5 |
This page is generated from data/natural_products/polyketides/midecamycin.yaml, which is generated from the committed inventories. Neither is edited by hand.